View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4607_low_9 (Length: 241)

Name: NF4607_low_9
Description: NF4607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4607_low_9
NF4607_low_9
[»] scaffold0202 (1 HSPs)
scaffold0202 (17-241)||(24680-24905)
[»] chr1 (4 HSPs)
chr1 (17-241)||(14817192-14817418)
chr1 (17-149)||(19371751-19371883)
chr1 (71-153)||(6201156-6201238)
chr1 (73-113)||(31543485-31543525)
[»] chr4 (7 HSPs)
chr4 (17-241)||(20556868-20557093)
chr4 (17-213)||(8660433-8660630)
chr4 (17-106)||(14884492-14884581)
chr4 (71-155)||(18040268-18040352)
chr4 (71-155)||(22707958-22708042)
chr4 (62-127)||(3360255-3360320)
chr4 (73-113)||(8099708-8099748)
[»] scaffold0357 (1 HSPs)
scaffold0357 (17-233)||(9277-9494)
[»] chr8 (5 HSPs)
chr8 (17-241)||(32002698-32002923)
chr8 (16-178)||(20736635-20736797)
chr8 (16-178)||(20745193-20745355)
chr8 (51-133)||(20741540-20741622)
chr8 (73-113)||(17679539-17679579)
[»] chr2 (6 HSPs)
chr2 (17-241)||(24701913-24702138)
chr2 (73-113)||(15949645-15949685)
chr2 (73-113)||(24288660-24288700)
chr2 (73-113)||(25498159-25498199)
chr2 (73-113)||(35142149-35142189)
chr2 (73-113)||(42571129-42571169)
[»] scaffold0600 (1 HSPs)
scaffold0600 (17-241)||(8925-9150)
[»] scaffold0243 (1 HSPs)
scaffold0243 (17-205)||(17470-17659)
[»] scaffold0001 (1 HSPs)
scaffold0001 (17-241)||(99394-99619)
[»] chr3 (11 HSPs)
chr3 (17-178)||(12476503-12476664)
chr3 (17-205)||(15623405-15623594)
chr3 (20-113)||(14421255-14421348)
chr3 (71-155)||(8808324-8808408)
chr3 (71-155)||(21611754-21611838)
chr3 (71-152)||(30016867-30016948)
chr3 (71-152)||(3680297-3680378)
chr3 (73-113)||(8202151-8202191)
chr3 (73-113)||(9551821-9551861)
chr3 (73-113)||(41001825-41001865)
chr3 (73-113)||(41010607-41010647)
[»] scaffold0132 (1 HSPs)
scaffold0132 (17-152)||(31821-31956)
[»] chr6 (7 HSPs)
chr6 (33-149)||(20456427-20456543)
chr6 (20-214)||(18912066-18912261)
chr6 (71-155)||(27513954-27514038)
chr6 (71-155)||(16821193-16821277)
chr6 (73-113)||(5007656-5007696)
chr6 (73-113)||(5989951-5989991)
chr6 (73-113)||(25503103-25503143)
[»] scaffold0114 (1 HSPs)
scaffold0114 (22-211)||(31002-31181)
[»] chr5 (6 HSPs)
chr5 (17-178)||(25529140-25529301)
chr5 (17-205)||(21691532-21691721)
chr5 (71-152)||(37581425-37581506)
chr5 (71-155)||(12391617-12391701)
chr5 (73-113)||(24961793-24961833)
chr5 (73-113)||(28847344-28847384)
[»] scaffold0068 (1 HSPs)
scaffold0068 (17-205)||(22189-22378)
[»] scaffold0084 (1 HSPs)
scaffold0084 (17-241)||(33218-33431)
[»] scaffold0155 (1 HSPs)
scaffold0155 (16-134)||(19993-20111)
[»] scaffold0005 (1 HSPs)
scaffold0005 (61-127)||(301966-302032)
[»] chr7 (3 HSPs)
chr7 (71-155)||(23882979-23883063)
chr7 (71-152)||(3428081-3428162)
chr7 (62-127)||(12587401-12587466)
[»] scaffold0014 (1 HSPs)
scaffold0014 (62-127)||(183663-183728)
[»] scaffold0016 (1 HSPs)
scaffold0016 (73-113)||(19184-19224)
[»] scaffold0002 (1 HSPs)
scaffold0002 (73-113)||(125281-125321)


Alignment Details
Target: scaffold0202 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 24905 - 24680
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  24905 tcaagaccagaacgcctcctccggtgcctaacgagttgccagtatggtatcaagctgacctctcatgtgccttccatcaaggagcacccggccatgacat 24806  T
Q  117 caagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttgc-tttcaaaaattaaattcagacgcgcaagataatccactgc 215  Q
    | | || |||||||||||| |||||||| ||||||| || | ||||||||||||||||| |||| ||  |||| ||||||||||||||||||||||||||    
T  24805 cgaacactgtttctctttgaagattgaagtccagaagctgattgaagctaacatgttgcttttcgaaggttaagttcagacgcgcaagataatccactgc 24706  T
Q  216 cgggatatattccctagtattgcgac 241  Q
     ||| ||||||| |||||||||||||    
T  24705 tgggttatattcgctagtattgcgac 24680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 14817418 - 14817192
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |||||||||    
T  14817418 tcaagatcagaacgcttcctctggtgcctaacgagttgccagtatggtatcaagctgacctctcctgtgccttccatcaaggagctcccgaccatgacat 14817319  T
Q  117 caagca-ttgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttgc-tttcaaaaattaaattcagacgcgcaagataatccactg 214  Q
    |||||| |  |||||||||| |||||||| ||||||| || | ||||||||||||||||| |||| ||  || |||||||||||||||||||||||| ||    
T  14817318 caagcactattttctctttgaagattgaagtccagaagctgattgaagctaacatgttgcttttcgaaggttgaattcagacgcgcaagataatccattg 14817219  T
Q  215 ccgggatatattccctagtattgcgac 241  Q
    ||||| |||||||||| ||||||||||    
T  14817218 ccgggttatattccctggtattgcgac 14817192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 19371751 - 19371883
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  19371751 tcaagaccagaacgcctcctccggtgcctaacgagttgctagtatggtatcaagctgacctcgcatgtgccttccatcaaggagcacccggccatgacat 19371850  T
Q  117 caagcattgtttctctttgcagattgaattcca 149  Q
    | |||| |||||||||||| |||||||| ||||    
T  19371851 cgagcactgtttctctttgaagattgaagtcca 19371883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 6201238 - 6201156
Alignment:
Q  71 ctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtttctctttgcagattgaattccagaaa 153  Q
    ||||||||| |||||||||||||||||| || |  || |||||| |  ||||||||||||| ||| |||||||| ||||||||    
T  6201238 ctgacctcttttgtgtcttccatcaaggggcgcaaggtcatgacgttgagcattgtttctccttgaagattgaaatccagaaa 6201156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 31543485 - 31543525
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  31543485 gacctctcttgtgtcttccatcaaggggcacctggtcatga 31543525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 20556868 - 20557093
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    ||||||||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| || |    
T  20556868 tcaagaccaaaacgcctcctcctgtgcctaacgagttgccagtatggtatcaagctgacctctcctgtgccttccatcaaggagctcccggccatcacgt 20556967  T
Q  117 caagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttgc-tttcaaaaattaaattcagacgcgcaagataatccactgc 215  Q
    | |||| |||||||||||| |||||||| |||||||  | | ||||||||| ||||||| |||| ||  || ||||||||||| |||||||||||| |||    
T  20556968 cgagcactgtttctctttgaagattgaagtccagaagttgattgaagctaatatgttgcttttcgaaggttgaattcagacgcacaagataatccattgc 20557067  T
Q  216 cgggatatattccctagtattgcgac 241  Q
    |||| |||||||||| ||||||||||    
T  20557068 cgggttatattccctggtattgcgac 20557093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 8660433 - 8660630
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||  ||| ||||||||||||||| ||| ||||||||||    
T  8660433 tcaagaccagaacgcctcctccggtgcctaacgagtttccagtatggtatcaagccgacctctcccgtgccttccatcaaggagctcccagccatgacat 8660532  T
Q  117 caagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttgc-tttcaaaaattaaattcagacgcgcaagataatccact 213  Q
    | |||| |||||||||||| |||||||| ||||||| || | ||||||||||||||||| |||| ||  || ||||||||||||||||||||||||||    
T  8660533 cgagcactgtttctctttgaagattgaagtccagaagctgattgaagctaacatgttgcttttcgaaggttgaattcagacgcgcaagataatccact 8660630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 14884492 - 14884581
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccg 106  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  14884492 tcaagaccagaacgcctcctccggtgcctaacgagttgccagtatggtatcaagctgacctctcctgtgccttccatcaaggagcacccg 14884581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 18040268 - 18040352
Alignment:
Q  71 ctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtttctctttgcagattgaattccagaaact 155  Q
    ||||||||| ||||| |||||||||||| ||||  || |||||| |  ||||||||||||| ||| |||||||| ||||||||||    
T  18040268 ctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaact 18040352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 22707958 - 22708042
Alignment:
Q  71 ctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtttctctttgcagattgaattccagaaact 155  Q
    ||||||||| ||||| |||||||||||| ||||  || |||||| |  ||||||||||||| ||| |||||||| ||||||||||    
T  22707958 ctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaact 22708042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 3360255 - 3360320
Alignment:
Q  62 ggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtt 127  Q
    |||||| | |||| ||||| |||| |||||||||||| |||||| ||||||||||  |||||||||    
T  3360255 ggtatcgatctgatctctcatgtgccttccatcaaggggcacccagccatgacattgagcattgtt 3360320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 8099748 - 8099708
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  8099748 gacctctcttgtgtcttccatcaaggggcacctggtcatga 8099708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 9277 - 9494
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    ||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||    
T  9277 tcaagaccagaacgcctcctccggtgcctaacgagttgacggtatggtatcaagctaacctctcatgtgccttccatcaaggagctcccggccatgacat 9376  T
Q  117 caagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttgc-tttcaaaaattaaattcagacgcgcaagataatccactgc 215  Q
    | ||||||||||||||||| | |||||| ||||||| || | |||| |||||||||| | |||| ||  || ||||||||| ||||||||||||||||||    
T  9377 cgagcattgtttctctttgaaaattgaagtccagaagctgattgaaactaacatgttccttttcgaaggttgaattcagacacgcaagataatccactgc 9476  T
Q  216 cgggatatattccctagt 233  Q
    || | |||||| ||||||    
T  9477 cgagttatattacctagt 9494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 32002698 - 32002923
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    ||||||||| ||| | |||||  |||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||| |    
T  32002698 tcaagaccaaaacacctcctcgagtgcctaacgagttgccagtatggtatcaagctgacctctcctgtgccttccatcaaggagctcccggccacgacgt 32002797  T
Q  117 caagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttgc-tttcaaaaattaaattcagacgcgcaagataatccactgc 215  Q
    | |||| |||||||||||| |||||||| |||||||  | | ||||||||| ||||||| |||| ||| || |||||| || ||||||||||||||||      
T  32002798 cgagcactgtttctctttgaagattgaagtccagaagttgattgaagctaatatgttgcttttcgaaagttgaattcaaacacgcaagataatccactaa 32002897  T
Q  216 cgggatatattccctagtattgcgac 241  Q
    |||| |||||||||| ||||||||||    
T  32002898 cgggttatattccctggtattgcgac 32002923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 20736635 - 20736797
Alignment:
Q  16 atcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgaca 115  Q
    |||||||||||| ||| ||||| |||||||||   ||||||||  ||||||||| || ||||||| | || |||||||||||||||||| ||||||||||    
T  20736635 atcaagaccagagcgcctcctcgggtgcctaacacgttgccagcttggtatcaatctaacctctcctatgccttccatcaaggagcaccgggccatgaca 20736734  T
Q  116 tcaagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttgcttt 178  Q
    ||||||| |||||||||||| ||| |||| ||||||| |||| |||||| || || |||||||    
T  20736735 tcaagcactgtttctctttgaagactgaagtccagaagcttattgaagccaatatcttgcttt 20736797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 20745193 - 20745355
Alignment:
Q  16 atcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgaca 115  Q
    |||||||||||| ||| ||||| |||||||||   ||||||||  ||||||||| || ||||||| | || |||||||||||||||||| ||||||||||    
T  20745193 atcaagaccagagcgcctcctcgggtgcctaacacgttgccagcttggtatcaatctaacctctcctatgccttccatcaaggagcaccgggccatgaca 20745292  T
Q  116 tcaagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttgcttt 178  Q
    ||||||| |||||||||||| ||| |||| ||||||| |||| |||||| || || |||||||    
T  20745293 tcaagcactgtttctctttgaagactgaagtccagaagcttattgaagccaatatcttgcttt 20745355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 20741540 - 20741622
Alignment:
Q  51 gttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtttctctt 133  Q
    ||||||||  |||||| || || ||||||| | || |||||||||| ||||||| |||||||||||| |||||||||||||||    
T  20741540 gttgccagcttggtattaatctaacctctcctatgccttccatcaacgagcaccgggccatgacatcgagcattgtttctctt 20741622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 17679579 - 17679539
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  17679579 gacctctcttgtgtcttccatcaaggggcacctggtcatga 17679539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 24701913 - 24702138
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    ||||||| ||| ||| |||||||||||||||||| |||||||||||||| |||||||||||||| | || ||||||||||||||| |||||| ||||||     
T  24701913 tcaagactagagcgcctcctccggtgcctaaggatttgccagtatggtaccaagctgacctctcctatgccttccatcaaggagctcccggcaatgacac 24702012  T
Q  117 caagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttgc-tttcaaaaattaaattcagacgcgcaagataatccactgc 215  Q
    | |||| |||||||||||| |||||||| ||||||| || | ||||||||||||||||| |||| || ||| |||||||| |||||| |||||||| ||     
T  24702013 cgagcactgtttctctttgaagattgaagtccagaagctgattgaagctaacatgttgcttttcgaagattgaattcagatgcgcaatataatccattgt 24702112  T
Q  216 cgggatatattccctagtattgcgac 241  Q
    |||| ||||||  || ||||||||||    
T  24702113 cgggttatattatctggtattgcgac 24702138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 15949685 - 15949645
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  15949685 gacctctcttgtgtcttccatcaaggggcacctggtcatga 15949645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 24288660 - 24288700
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  24288660 gacctctcttgtgtcttccatcaaggggcacctggtcatga 24288700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 25498159 - 25498199
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  25498159 gacctctcttgtgtcttccatcaaggggcacctggtcatga 25498199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 35142149 - 35142189
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  35142149 gacctctcttgtgtcttccatcaaggggcacctggtcatga 35142189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 42571169 - 42571129
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  42571169 gacctctcttgtgtcttccatcaaggggcacctggtcatga 42571129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 8925 - 9150
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    ||||||||||||||| |||||  |||||||| ||||||| |||||||||||||||||||||||| | || ||||||||||||||| |||| ||||||| |    
T  8925 tcaagaccagaacgcctcctcgagtgcctaacgagttgctagtatggtatcaagctgacctctcctctgccttccatcaaggagctcccgaccatgacgt 9024  T
Q  117 caagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttgc-tttcaaaaattaaattcagacgcgcaagataatccactgc 215  Q
      |||| | |||||||||| |||||||| ||||||   | | ||||||||| ||||||| |||| || ||| ||||||||| ||||||||||||||||      
T  9025 tgagcactatttctctttgaagattgaagtccagatgttgattgaagctaatatgttgcttttcgaagattgaattcagacacgcaagataatccactaa 9124  T
Q  216 cgggatatattccctagtattgcgac 241  Q
    |||| |||||||||| ||||||||||    
T  9125 cgggttatattccctggtattgcgac 9150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 17470 - 17659
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||| |||| ||||||||||||||| || ||||||||||     
T  17470 tcaagaccagaacgcctcctcaggtgcctaacgagttgccagtatggtaccaagctgacctctcctgtgccttccatcaaggagctcctggccatgacac 17569  T
Q  117 caagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttg-ctttcaaaaattaaattcagacgcgcaagat 205  Q
    | |||||||||||||| || | |  ||| ||||||| |||| ||||||||||||||||  ||||||| ||| |||||||||| |||||||    
T  17570 cgagcattgtttctctctgaaaacggaagtccagaagcttattgaagctaacatgttgtttttcaaagattgaattcagacgggcaagat 17659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 99394 - 99619
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    ||||||||||||||| |||||  |||||||| ||||||| |||||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||  |    
T  99394 tcaagaccagaacgcctcctcgagtgcctaatgagttgctagtatggtatcaagctgacctctcctgtgccttccatcaaggagctcccggccacgatgt 99493  T
Q  117 caagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttgc-tttcaaaaattaaattcagacgcgcaagataatccactgc 215  Q
    | |||| |||||||| ||| |||||||| |||||||  | | ||||||||| ||||||| |||| ||  || |||||||||  |||||||||||||||      
T  99494 cgagcactgtttctcattgaagattgaagtccagaagttgattgaagctaatatgttgcttttcgaaggttgaattcagacaggcaagataatccactaa 99593  T
Q  216 cgggatatattccctagtattgcgac 241  Q
    |||| |||||||||| ||||||||||    
T  99594 cgggttatattccctggtattgcgac 99619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 12476664 - 12476503
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||||    
T  12476664 tcaagaccagaacgcctcctccggtgcctaacgagttgccagtatggtatcaagctgacctctcctgtgccttccatcgaggagcacccgaccatgacat 12476565  T
Q  117 caagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttgcttt 178  Q
      ||||||||||||||||| ||| |||| ||||||| || | |||||| || || |||||||    
T  12476564 tgagcattgtttctctttgaagactgaagtccagaagctgattgaagccaatatcttgcttt 12476503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 15623405 - 15623594
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    |||| |||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||| |||| ||||||| ||| ||| |||| |||||| |     
T  15623405 tcaacaccagaacgcctcctcaggtgcctaaagagttgccagtatggtaccaagctgacctctcctgtgccttccattaagaagctcccgaccatgaaac 15623504  T
Q  117 caagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttg-ctttcaaaaattaaattcagacgcgcaagat 205  Q
    | |||| ||||||||| || | |  ||| ||||||| |||| ||||||||||||||||  ||||||| ||| ||||||||||||||||||    
T  15623505 cgagcactgtttctctctgaaaacggaagtccagaagcttattgaagctaacatgttgtttttcaaagattgaattcagacgcgcaagat 15623594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 14421255 - 14421348
Alignment:
Q  20 agaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||| ||||||||| ||||| |||||||||||||||||||||||| ||||||| |||| |||||||||| | ||||| ||||||||    
T  14421255 agaccagaacgcctcctccggttcctaacgagttgccagtatggtatcaagctaacctctcctgtgccttccatcaaagggcacctggccatga 14421348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 8808324 - 8808408
Alignment:
Q  71 ctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtttctctttgcagattgaattccagaaact 155  Q
    ||||||||| ||||| |||||||||||| ||||  || |||||| |  ||||||||||||| ||| |||||||| ||||||||||    
T  8808324 ctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaact 8808408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 21611754 - 21611838
Alignment:
Q  71 ctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtttctctttgcagattgaattccagaaact 155  Q
    ||||||||| ||||| |||||||||||| ||||  || |||||| |  ||||||||||||| ||| |||||||| ||||||||||    
T  21611754 ctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaact 21611838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 30016867 - 30016948
Alignment:
Q  71 ctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtttctctttgcagattgaattccagaa 152  Q
    ||||||||| |||||  ||||||||||||||||   | ||||||||  ||||||||||||| ||| |||||||| |||||||    
T  30016867 ctgacctctgttgtgctttccatcaaggagcacaaagtcatgacattgagcattgtttctccttgaagattgaagtccagaa 30016948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 3680297 - 3680378
Alignment:
Q  71 ctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtttctctttgcagattgaattccagaa 152  Q
    ||||||||| |||||  ||||||||||||||||   | |||||| |  ||||||||||||| ||| |||||||| |||||||    
T  3680297 ctgacctctgttgtgctttccatcaaggagcacaaagtcatgacgttgagcattgtttctccttgaagattgaagtccagaa 3680378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 8202191 - 8202151
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  8202191 gacctctcttgtgtcttccatcaaggggcacctggtcatga 8202151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 9551861 - 9551821
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  9551861 gacctctcttgtgtcttccatcaaggggcacctggtcatga 9551821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 41001825 - 41001865
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  41001825 gacctctcttgtgtcttccatcaaggggcacctggtcatga 41001865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 41010607 - 41010647
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  41010607 gacctctcttgtgtcttccatcaaggggcacctggtcatga 41010647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 31821 - 31956
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    ||||||| |||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||    
T  31821 tcaagactagaaagcctcctccggtgcctaacgagttgccagtatggtatcaagctgacctctcctgtgccttccatcaaggagctcccggccatgacat 31920  T
Q  117 caagcattgtttctctttgcagattgaattccagaa 152  Q
    | |||| |||||||||||| |||||||| |||||||    
T  31921 cgagcactgtttctctttgaagattgaagtccagaa 31956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 20456543 - 20456427
Alignment:
Q  33 tcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtttctct 132  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||| |||| |||||||||    
T  20456543 tcctccggtgcctaacgagttgccagtatggtatcaagctgacctcgcatgtgccttccatcaaggagcacccggccatgacatcgagcactgtttctct 20456444  T
Q  133 ttgcagattgaattcca 149  Q
    ||| |||||||| ||||    
T  20456443 ttgaagattgaagtcca 20456427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 18912066 - 18912261
Alignment:
Q  20 agaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaa 119  Q
    ||||||||  || ||||| |||||||||  ||||||| || ||||||||| |||||||||| |||  |||||||||||||||||| |||||||||||| |    
T  18912066 agaccagagtgcctcctcgggtgcctaacaagttgccggtttggtatcaatctgacctctcatgttccttccatcaaggagcaccaggccatgacatcga 18912165  T
Q  120 gcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttgc-tttcaaaaattaaattcagacgcgcaagataatccactg 214  Q
    |||  ||||||||||| ||| |||| ||||||| || | |||||| || || |||| |||  || ||||||||| ||||  |||| ||||||||||    
T  18912166 gcaccgtttctctttgaagactgaagtccagaagctgattgaagccaatatcttgctttttgaagattaaattcggacgtacaagttaatccactg 18912261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 155
Target Start/End: Original strand, 27513954 - 27514038
Alignment:
Q  71 ctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtttctctttgcagattgaattccagaaact 155  Q
    ||||||||| ||||| |||||||||||| ||||  || |||||| |  ||||||||||||| ||| |||||||| ||||||||||    
T  27513954 ctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaact 27514038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 16821277 - 16821193
Alignment:
Q  71 ctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtttctctttgcagattgaattccagaaact 155  Q
    ||||||||| ||||| |||||||||||| ||||  || |||||| |  ||||||||||||| ||| |||||||  ||||||||||    
T  16821277 ctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaggtccagaaact 16821193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 5007656 - 5007696
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  5007656 gacctctcttgtgtcttccatcaaggggcacctggtcatga 5007696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 5989951 - 5989991
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  5989951 gacctctcttgtgtcttccatcaaggggcacctggtcatga 5989991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 25503143 - 25503103
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  25503143 gacctctcttgtgtcttccatcaaggggcacctggtcatga 25503103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 31181 - 31002
Alignment:
Q  22 accagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagc 121  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||           ||||||||||||| |||||||||||| |||    
T  31181 accataacgcctcctccggtgcctaacgagttgccagtatggtatcaagctgacctctc-----------atcaaggagcacctggccatgacatcgagc 31093  T
Q  122 attgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttgc-tttcaaaaattaaattcagacgcgcaagataatcca 211  Q
    | |||||||||||| |||||||| |||| || || | ||||||||||||||||| |||| ||  || |||| ||| |||||||||||||||    
T  31092 aatgtttctctttgaagattgaagtccataagctgattgaagctaacatgttgcttttcgaaggttgaatttagatgcgcaagataatcca 31002  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 25529140 - 25529301
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    ||||||||||||||| ||||| ||||||||| |||||||| ||||||||||||||||| ||||| |||  ||||||||| ||||| |||| |||||||||    
T  25529140 tcaagaccagaacgcctcctcaggtgcctaacgagttgcccgtatggtatcaagctgatctctcctgtaccttccatcatggagctcccgaccatgacat 25529239  T
Q  117 caagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttgcttt 178  Q
    | |||| ||||||||||||  || |||| ||||||| || | |||||| || || |||||||    
T  25529240 cgagcactgtttctctttgacgactgaagtccagaagctgattgaagccaatatcttgcttt 25529301  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 21691532 - 21691721
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    |||| |||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||| | || ||||||| ||| ||| || | |||||| |     
T  21691532 tcaacaccagaacgcctcctcaggtgcctaaagagttgccagtatggtaccaagctgacctctcctatgccttccattaagaagctcctgaccatgaaac 21691631  T
Q  117 caagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttg-ctttcaaaaattaaattcagacgcgcaagat 205  Q
    | |||| | ||||||| || | |  ||| ||||||| |||| ||||||||||||||||  ||||||| ||| ||||||||||||||||||    
T  21691632 cgagcactatttctctctgaaaacggaagtccagaagcttattgaagctaacatgttgtttttcaaagattgaattcagacgcgcaagat 21691721  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 37581425 - 37581506
Alignment:
Q  71 ctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtttctctttgcagattgaattccagaa 152  Q
    ||||||||| |||||  ||||||||||||||||  || ||||||||  ||||||||||||| ||| |||||||| |||||||    
T  37581425 ctgacctcttttgtgctttccatcaaggagcacaaggtcatgacattgagcattgtttctccttgaagattgaagtccagaa 37581506  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 12391701 - 12391617
Alignment:
Q  71 ctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtttctctttgcagattgaattccagaaact 155  Q
    ||||||||| ||||| |||||||||||| ||||  || |||||| |  ||||||||||||| ||| |||||||| ||||||||||    
T  12391701 ctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaact 12391617  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 24961833 - 24961793
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  24961833 gacctctcttgtgtcttccatcaaggggcacctggtcatga 24961793  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 28847344 - 28847384
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  28847344 gacctctcttgtgtcttccatcaaggggcacctggtcatga 28847384  T

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Target: scaffold0068 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 22378 - 22189
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    |||| |||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||| | || ||||||| ||| ||| || | |||||| |     
T  22378 tcaacaccagaacgcctcctcaggtgcctaaagagttgccagtatggtaccaagctgacctctcctatgccttccattaagaagctcctgaccatgaaac 22279  T
Q  117 caagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttg-ctttcaaaaattaaattcagacgcgcaagat 205  Q
    | |||| | ||||||| || | |  ||| ||||||| |||| ||||||||||||||||  ||||||| ||| ||||||||||||||||||    
T  22278 cgagcactatttctctctgaaaacggaagtccagaagcttattgaagctaacatgttgtttttcaaagattgaattcagacgcgcaagat 22189  T

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Target: scaffold0084 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 33431 - 33218
Alignment:
Q  17 tcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacat 116  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||            | ||| |||| ||||||||     
T  33431 tcaagaccagaacgcctcctccggtgcctaacgagttgccagtatggtatcaagctgacctctcctgt------------gcagctcccgaccatgacac 33344  T
Q  117 caagcattgtttctctttgcagattgaattccagaaacttaatgaagctaacatgttgc-tttcaaaaattaaattcagacgcgcaagataatccactgc 215  Q
    | |||| ||||||||| || | |  ||| ||||||| |||| ||||||||||||||| | |||| ||  || ||||||||||||||||||||||||||      
T  33343 cgagcactgtttctctctgaaaacagaagtccagaagcttattgaagctaacatgtttcttttcgaaggttgaattcagacgcgcaagataatccactaa 33244  T
Q  216 cgggatatattccctagtattgcgac 241  Q
    |  | |||||||||| ||||||||||    
T  33243 catgttatattccctggtattgcgac 33218  T

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Target: scaffold0155 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 20111 - 19993
Alignment:
Q  16 atcaagaccagaacgcttcctccggtgcctaaggagttgccagtatggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgaca 115  Q
    |||||||||||| | | ||||| ||||||| |   |||||| |  ||||||||| || ||||||| |||| |||||||||||||||||| ||||||||||    
T  20111 atcaagaccagagcacctcctcgggtgcctgacacgttgccggcttggtatcaatctaacctctcctgtgccttccatcaaggagcaccgggccatgaca 20012  T
Q  116 tcaagcattgtttctcttt 134  Q
    || ||||||||||||||||    
T  20011 tcgagcattgtttctcttt 19993  T

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Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 301966 - 302032
Alignment:
Q  61 tggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtt 127  Q
    ||||||||| |||| ||||| |||| |||||||||||| |||||||||||||||||  |||||||||    
T  301966 tggtatcaatctgatctctcatgtgccttccatcaaggggcacccggccatgacattgagcattgtt 302032  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 23883063 - 23882979
Alignment:
Q  71 ctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtttctctttgcagattgaattccagaaact 155  Q
    ||||||||| ||||| |||||||||||| ||||  || |||||| |  ||||||||||||| ||| |||||||| ||||||||||    
T  23883063 ctgacctcttttgtgccttccatcaaggggcacaaggtcatgacgttgagcattgtttctccttgaagattgaagtccagaaact 23882979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 3428162 - 3428081
Alignment:
Q  71 ctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtttctctttgcagattgaattccagaa 152  Q
    ||||||||| |||||  ||||||||||||||||   | ||||||||  ||||||||||||| ||| |||||||| |||||||    
T  3428162 ctgacctctgttgtgctttccatcaaggagcacaaagtcatgacattgagcattgtttctccttgaagattgaagtccagaa 3428081  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 12587401 - 12587466
Alignment:
Q  62 ggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtt 127  Q
    |||||| | |||| ||||| |||| |||||||||||| ||||||| |||||||||  |||||||||    
T  12587401 ggtatcgatctgatctctcatgtgccttccatcaaggggcacccgaccatgacattgagcattgtt 12587466  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 183728 - 183663
Alignment:
Q  62 ggtatcaagctgacctctcttgtgtcttccatcaaggagcacccggccatgacatcaagcattgtt 127  Q
    |||||| | |||| ||||| |||| ||| |||||||| |||||||||||||||||  |||||||||    
T  183728 ggtatcgatctgatctctcatgtgcctttcatcaaggggcacccggccatgacattgagcattgtt 183663  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 19184 - 19224
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  19184 gacctctcttgtgtcttccatcaaggggcacctggtcatga 19224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 125281 - 125321
Alignment:
Q  73 gacctctcttgtgtcttccatcaaggagcacccggccatga 113  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  125281 gacctctcttgtgtcttccatcaaggggcacctggtcatga 125321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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