View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4608-Insertion-10 (Length: 919)

Name: NF4608-Insertion-10
Description: NF4608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4608-Insertion-10
NF4608-Insertion-10
[»] chr1 (6 HSPs)
chr1 (310-846)||(42837128-42837652)
chr1 (10-253)||(42837706-42837949)
chr1 (660-782)||(35598628-35598750)
chr1 (622-747)||(35599177-35599305)
chr1 (123-241)||(25281049-25281163)
chr1 (10-102)||(25280964-25281058)
[»] scaffold0368 (2 HSPs)
scaffold0368 (310-737)||(13155-13569)
scaffold0368 (10-253)||(12858-13101)
[»] chr2 (6 HSPs)
chr2 (527-678)||(7390270-7390428)
chr2 (527-678)||(19586684-19586842)
chr2 (683-850)||(7390568-7390736)
chr2 (683-850)||(19586376-19586544)
chr2 (635-678)||(7390508-7390551)
chr2 (635-678)||(19586561-19586604)
[»] chr4 (6 HSPs)
chr4 (527-678)||(11658538-11658696)
chr4 (683-850)||(11658109-11658275)
chr4 (683-850)||(50234362-50234528)
chr4 (635-678)||(11658292-11658335)
chr4 (635-678)||(11658383-11658426)
chr4 (641-678)||(50234545-50234582)
[»] chr3 (1 HSPs)
chr3 (527-678)||(51655408-51655566)
[»] scaffold1463 (1 HSPs)
scaffold1463 (683-850)||(87-253)
[»] chr8 (2 HSPs)
chr8 (123-241)||(12346777-12346892)
chr8 (21-102)||(12346703-12346786)


Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 310 - 846
Target Start/End: Complemental strand, 42837652 - 42837128
Alignment:
Q  310 actggaaacccgccaccatttactcctctgatttattcctcgccggcagaaagttaaagccatgcatgctcttactcttatgcttcttcccttttcaact 409  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||            |||||||||||||||||||||||||||||||    
T  42837652 actggaaacccgccaccatttactcctctgatttatccctcgccgacagaaagttaa------------tcttactcttatgcttcttcccttttcaact 42837565  T
Q  410 ccagcggcgctgaactcggcggcagatccatggttctgagtctcgacattcataacgaggacctaagacaacacacttggttattcttctcacatctcgc 509  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |  |||||||||||||||||||| |    
T  42837564 ccagcggcgctgaactcggcggcagatccatggctctgagtctcgacattcataacgaggacctaacacaacacgcagggttattcttctcacatctcac 42837465  T
Q  510 cggaaaatcgatttcgatgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaactgtcaccggtaactcactttc 609  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  42837464 cggaaaatcaatttctctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaagtgtcgccggtaactcactttc 42837365  T
Q  610 tcccaccgattcatgttcatattgattgtgtaaatttttctaatttcgaatttgacattagggtttgaaaatcgttgattttgatatgtgattgtgtgaa 709  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42837364 tcccaccgattcatgttcatattgattgtgtgaatttttctaatttcgaatttgacattagggtttgaaaatcgttgattttgatatgtgattgtgtgaa 42837265  T
Q  710 ttataactttttcttcattgttagaatagtttttgttcnnnnnnncatcgttcgttgttgtatttcgtttctttctctgtgtttcagtctcaattcaata 809  Q
    ||||||||||||||||||||||||||||||||||||||       ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42837264 ttataactttttcttcattgttagaatagtttttgttctttttttcattgttagttgttgtatttcgtttctttctctgtgtttcagtctcaattcaata 42837165  T
Q  810 ccttgcaattgtgccacttctatgtttatgttcttct 846  Q
    |||||||||  |||||||||| | |||||| ||||||    
T  42837164 ccttgcaatcatgccacttctctttttatgctcttct 42837128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 42837949 - 42837706
Alignment:
Q  10 atctttatacataatccaaaggtacataatgcatatccctaaccctaaaaatttgacgcctacctctttcaaatttgaatttcaaattcccttcaactta 109  Q
    |||||||||  ||||| |||||||||||||||||| ||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  42837949 atctttatatctaatctaaaggtacataatgcata-cccaaaccctaaaaatttggcgcctccctcttccaaatttgaatttcaaattcccttcaactta 42837851  T
Q  110 nnnnnnnnngataaaattcccttcaacttattctttgcatcgtaaatgacctgcatttactctcatctatatacatt-accattttgtcttccacgttac 208  Q
             || ||||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||||| |||     
T  42837850 tttttttttgacaaaattcccttcaacctattgtttgcatcctaaatgacatgcatttactctcatctatatgcatttaccattttgtcttccacattat 42837751  T
Q  209 tttttcttcttcattttccaacaaagcaaaatttgtctctgaatt 253  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||    
T  42837750 tttttcttcttcatttttcaacaaagcaaaatttatctctgaatt 42837706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 660 - 782
Target Start/End: Original strand, 35598628 - 35598750
Alignment:
Q  660 tttgacattagggtttgaaaatcgttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttcnnnnnnncatcg 759  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||       ||| |    
T  35598628 tttgacaatagggtttgaaaattgttgattttgatatgtgattgtgtgaaatatagctttttcttcattgttagattagtttttgttctttttttcattg 35598727  T
Q  760 ttcgttgttgtatttcgtttctt 782  Q
    || ||||||||||||||||||||    
T  35598728 ttagttgttgtatttcgtttctt 35598750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 622 - 747
Target Start/End: Original strand, 35599177 - 35599305
Alignment:
Q  622 atgttcatattgattgtgtaaatttttctaatttcgaat--ttgacattagggtttgaaaatcgttgattttgatatgtgattgtgtgaattata-actt 718  Q
    |||||||||||||||||||  |||||  |||||| ||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  35599177 atgttcatattgattgtgtgcattttgataattttgaatccttgacaatagggtttgaaaatcgttgattttgatatgtgattgtgtgaattatagtctt 35599276  T
Q  719 tttcttcattgttagaatagtttttgttc 747  Q
    ||| |  ||||||||| ||||||||||||    
T  35599277 tttttctattgttagattagtttttgttc 35599305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 123 - 241
Target Start/End: Original strand, 25281049 - 25281163
Alignment:
Q  123 aaattcccttcaacttattctttgcatcgtaaatgacctgcatttactctcatctatataca-ttaccattttgtcttccacgttactttttcttcttca 221  Q
    |||||||||| |||||||| ||||||||| |||| || ||||||||||||||||||||  || |||||||||||||| |||||||||||    |||||||    
T  25281049 aaattccctt-aacttattgtttgcatcggaaataacatgcatttactctcatctataagcatttaccattttgtctcccacgttactt----ttcttca 25281143  T
Q  222 ttttccaacaaagcaaaatt 241  Q
    |||| |||||||||| ||||    
T  25281144 tttttcaacaaagcagaatt 25281163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 25280964 - 25281058
Alignment:
Q  10 atctttatacataatccaaaggtacataatgcatatcc-ctaaccctaaaaatttgac-gcctacctctttcaaatttgaatttcaaattccctt 102  Q
    |||||||||  |||||||||||||||||||||||| || |||||||||||||| || |  ||| |||||| ||||||||||||||||||||||||    
T  25280964 atctttatatctaatccaaaggtacataatgcataccctctaaccctaaaaatatggcaccctccctcttccaaatttgaatttcaaattccctt 25281058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 310 - 737
Target Start/End: Original strand, 13155 - 13569
Alignment:
Q  310 actggaaacccgccaccatttactcctctgatttattcctcgccggcagaaagttaaagccatgcatgctcttactcttatgcttcttcccttttcaact 409  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||            |||||||||||||||||||||||||||||||    
T  13155 actggaaacccgccaccatttactcctctgatttatccctcgccgacagaaagttaa------------tcttactcttatgcttcttcccttttcaact 13242  T
Q  410 ccagcggcgctgaactcggcggcagatccatggttctgagtctcgacattcataacgaggacctaagacaacacacttggttattcttctcacatctcgc 509  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |  |||||||||||||||||||| |    
T  13243 ccagcggcgctgaactcggcggcagatccatggctctgagtctcgacattcataacgaggacctaacacaacacgcagggttattcttctcacatctcac 13342  T
Q  510 cggaaaatcgatttcgatgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaactgtcaccggtaactcactttc 609  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  13343 cggaaaatcaatttctctgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaagtgtcgccggtaactcactttc 13442  T
Q  610 tcccaccgattcatgttcatattgattgtgtaaatttttctaatttcgaatttgacattagggtttgaaaatcgttgattttgatatgtgattgtgtgaa 709  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13443 tcccaccgattcatgttcatattgattgtgtgaatttttctaatttccaatttgacattagggtttg-aaatcgttgattttgatatgtgattgtgtgaa 13541  T
Q  710 ttataactttttcttcattgttagaata 737  Q
    |||||  |||||||||||||||||||||    
T  13542 ttatacttttttcttcattgttagaata 13569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 10 - 253
Target Start/End: Original strand, 12858 - 13101
Alignment:
Q  10 atctttatacataatccaaaggtacataatgcatatccctaaccctaaaaatttgacgcctacctctttcaaatttgaatttcaaattcccttcaactta 109  Q
    |||||||||  ||||| |||||||||||||||||| ||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  12858 atctttatatctaatctaaaggtacataatgcata-cccaaaccctaaaaatttggcgcctccctcttccaaatttgaatttcaaattcccttcaactta 12956  T
Q  110 nnnnnnnnngataaaattcccttcaacttattctttgcatcgtaaatgacctgcatttactctcatctatatacatt-accattttgtcttccacgttac 208  Q
             || ||||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||||| |||     
T  12957 tttttttttgacaaaattcccttcaacctattgtttgcatcctaaatgacatgcatttactctcatctatatgcatttaccattttgtcttccacattat 13056  T
Q  209 tttttcttcttcattttccaacaaagcaaaatttgtctctgaatt 253  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||    
T  13057 tttttcttcttcatttttcaacaaagcaaaatttatctctgaatt 13101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 527 - 678
Target Start/End: Original strand, 7390270 - 7390428
Alignment:
Q  527 tgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaactgtcaccggtaactcactttctcccaccga-------t 619  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||       |    
T  7390270 tgatccacgcacatctcgccgactccgcaaatgccgccgcaacaacaaatgaccttcgtaattgtcaccggtaactcactttctcccaccgattcatgtt 7390369  T
Q  620 tcatgttcatattgattgtgtaaatttttctaatttcgaatttgacattagggtttgaa 678  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  7390370 tcatgttcatattgattgtgtgaattttgctaattttgaatttgacattagggtttgaa 7390428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 527 - 678
Target Start/End: Complemental strand, 19586842 - 19586684
Alignment:
Q  527 tgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaactgtcaccggtaactcactttctcccaccgattca---- 622  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||        
T  19586842 tgatccacgcacatctcgccgactccgcaaatgccgccgcaacaacaaatgaccttcgtaattgtcaccggtaactcactttctcccaccgattcatgtt 19586743  T
Q  623 ---tgttcatattgattgtgtaaatttttctaatttcgaatttgacattagggtttgaa 678  Q
       |||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  19586742 tcatgttcatattgattgtgtgaattttgctaattttgaatttgacattagggtttgaa 19586684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 683 - 850
Target Start/End: Original strand, 7390568 - 7390736
Alignment:
Q  683 gttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgtt--cnnnnnnncatcgttcgttgttgtatttcgtttc 780  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||  |       ||| ||| ||| ||||| | |||| |    
T  7390568 gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagttttttttttctttttttcattgttagtttttgtaat-cgttac 7390666  T
Q  781 tttctctgtgtttcagtctcaattcaataccttgcaattgtgccacttctatgtttatgttcttctactt 850  Q
    ||||||||||||||||||||||||||||||||||||||  ||| |||||| |||||||||||||||||||    
T  7390667 tttctctgtgtttcagtctcaattcaataccttgcaatcatgctacttctttgtttatgttcttctactt 7390736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 683 - 850
Target Start/End: Complemental strand, 19586544 - 19586376
Alignment:
Q  683 gttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgtt--cnnnnnnncatcgttcgttgttgtatttcgtttc 780  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  |       ||| ||| |||  |||| | |||| |    
T  19586544 gttgattttgatatgtgattgtgtgaattacaactttttcttcattgttagaatagttttttttttctttttttcattgttagtttctgtaat-cgttac 19586446  T
Q  781 tttctctgtgtttcagtctcaattcaataccttgcaattgtgccacttctatgtttatgttcttctactt 850  Q
    ||||||||||||||||||||||||||||||||||||||  ||| |||||| |||||||||||||||||||    
T  19586445 tttctctgtgtttcagtctcaattcaataccttgcaatcatgctacttctttgtttatgttcttctactt 19586376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 678
Target Start/End: Original strand, 7390508 - 7390551
Alignment:
Q  635 ttgtgtaaatttttctaatttcgaatttgacattagggtttgaa 678  Q
    ||||||||||||| ||||||| ||||||||||||||||| ||||    
T  7390508 ttgtgtaaattttgctaattttgaatttgacattagggtgtgaa 7390551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 678
Target Start/End: Complemental strand, 19586604 - 19586561
Alignment:
Q  635 ttgtgtaaatttttctaatttcgaatttgacattagggtttgaa 678  Q
    ||||||||||||| ||||||| ||||||||||||||||| ||||    
T  19586604 ttgtgtaaattttgctaattttgaatttgacattagggtgtgaa 19586561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 6e-52; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 527 - 678
Target Start/End: Complemental strand, 11658696 - 11658538
Alignment:
Q  527 tgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaactgtcaccggtaactcactttctcccaccgattca---- 622  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||        
T  11658696 tgatccacgcacatctcgccgactccgcaaatgccgccgcaacaacaaatgaccttcgtaattgtcaccggtaactcactttctcctaccgattcatgtt 11658597  T
Q  623 ---tgttcatattgattgtgtaaatttttctaatttcgaatttgacattagggtttgaa 678  Q
       |||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  11658596 tcatgttcatattgattgtgtgaattttgctaattttgaatttgacattagggtttgaa 11658538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 683 - 850
Target Start/End: Complemental strand, 11658275 - 11658109
Alignment:
Q  683 gttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttcnnnnnnncatcgttcgttgttgtatttcgtttctt 782  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||       ||| ||| ||| ||||| | |||| |||    
T  11658275 gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagttttttttctttttttcattgttagtttttgtaat-cgttactt 11658177  T
Q  783 tctctgtgtttcagtctcaattcaataccttgcaattgtgccacttctatgtttatgttcttctactt 850  Q
    ||||||||||||||||||||||||||||||||||||  ||| |||||| |||||||||||||||||||    
T  11658176 tctctgtgtttcagtctcaattcaataccttgcaatcatgctacttctttgtttatgttcttctactt 11658109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 683 - 850
Target Start/End: Complemental strand, 50234528 - 50234362
Alignment:
Q  683 gttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttcnnnnnnncatcgttcgttgttgtatttcgtttctt 782  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||| ||| ||| |||||  | |||  ||    
T  50234528 gttgattttgatatgtgattgtgtgaattacaactttttcttcattgttagaatagtttttgttctttttttcattgttagtttttgta-atagttattt 50234430  T
Q  783 tctctgtgtttcagtctcaattcaataccttgcaattgtgccacttctatgtttatgttcttctactt 850  Q
    | |||||||||||||||||||||||||||||||||   ||| |||||| |||||||||||||||||||    
T  50234429 tatctgtgtttcagtctcaattcaataccttgcaaccatgctacttctctgtttatgttcttctactt 50234362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 678
Target Start/End: Complemental strand, 11658335 - 11658292
Alignment:
Q  635 ttgtgtaaatttttctaatttcgaatttgacattagggtttgaa 678  Q
    ||||||||||||| ||||||| ||||||||||||||||| ||||    
T  11658335 ttgtgtaaattttgctaattttgaatttgacattagggtgtgaa 11658292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 678
Target Start/End: Complemental strand, 11658426 - 11658383
Alignment:
Q  635 ttgtgtaaatttttctaatttcgaatttgacattagggtttgaa 678  Q
    ||||||||||||| ||||||| ||||||||||||||||| ||||    
T  11658426 ttgtgtaaattttgctaattttgaatttgacattagggtgtgaa 11658383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 678
Target Start/End: Complemental strand, 50234582 - 50234545
Alignment:
Q  641 aaatttttctaatttcgaatttgacattagggtttgaa 678  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  50234582 aaattttgctaatttcgaatttgacattagggtatgaa 50234545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 3e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 527 - 678
Target Start/End: Original strand, 51655408 - 51655566
Alignment:
Q  527 tgatccacgcacatctcgccgactccgcaactgccgccacaacaacaaatgaccttcgtaactgtcaccggtaactcactttctcccaccga-------t 619  Q
    |||||||||||||||||||||||||||||| | |||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||       |    
T  51655408 tgatccacgcacatctcgccgactccgcaatttccgccggaacaacaaatgaccttcgtaattgtcaccggtaactcactttctcccaccgattcatgtt 51655507  T
Q  620 tcatgttcatattgattgtgtaaatttttctaatttcgaatttgacattagggtttgaa 678  Q
    |||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||||    
T  51655508 tcatgttcatattgatagtgtgaattttgctaattttgaatttgacattagggtttgaa 51655566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1463 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: scaffold1463
Description:

Target: scaffold1463; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 683 - 850
Target Start/End: Original strand, 87 - 253
Alignment:
Q  683 gttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttcnnnnnnncatcgttcgttgttgtatttcgtttctt 782  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||       ||| ||| ||| ||||   ||||| |||    
T  87 gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagtttttgttctttttttcattgttagtttttgt-gatcgttactt 185  T
Q  783 tctctgtgtttcagtctcaattcaataccttgcaattgtgccacttctatgtttatgttcttctactt 850  Q
    ||||| |||||||||||||||| |||||||||||||  ||| | |||| |||||||||||||||||||    
T  186 tctctatgtttcagtctcaattgaataccttgcaatcatgctatttctctgtttatgttcttctactt 253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 123 - 241
Target Start/End: Original strand, 12346777 - 12346892
Alignment:
Q  123 aaattcccttcaacttattctttgcatcgtaaatgacctgcatttactctcatctatataca-ttaccattttgtcttccacgttactttttcttcttca 221  Q
    |||||||||| |||||||| ||||||||| |||| || ||||||||||||||||||||  || |||||||||||||| ||| ||||||||   |||||||    
T  12346777 aaattccctt-aacttattgtttgcatcggaaataacatgcatttactctcatctataagcatttaccattttgtctcccatgttacttt---ttcttca 12346872  T
Q  222 ttttccaacaaagcaaaatt 241  Q
    |||| |||||||||| ||||    
T  12346873 tttttcaacaaagcagaatt 12346892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 12346703 - 12346786
Alignment:
Q  21 taatccaaaggtacataatgcatatcc-ctaaccctaaaaatttgacgcc-tacctctttcaaatttgaatttcaaattccctt 102  Q
    |||||||||||||||||||||||| || |||||||||||||| || | || | |||||| ||||||||||||||||||||||||    
T  12346703 taatccaaaggtacataatgcataccctctaaccctaaaaatctggcaccctccctcttccaaatttgaatttcaaattccctt 12346786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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