View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4608-Insertion-3 (Length: 512)
Name: NF4608-Insertion-3
Description: NF4608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4608-Insertion-3 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 218 - 512
Target Start/End: Complemental strand, 35462508 - 35462214
Alignment:
| Q |
218 |
aatactcaaaat-aatatctctatcgtgaatgtgatccgatcagaaattagcattcagtcaggagcaaaattgaggtgtcccaaaaaccaacgatgaata |
316 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35462508 |
aatactcaaaatgaatatctctatcgtgaatgcgatccaatcagaaattaccattcagtcaggagcaaaattgaggtgtcccaaaaaccaacgatgaata |
35462409 |
T |
|
| Q |
317 |
aaagtcagctacgaaacacgaggtctgccttcatcttactacccgtcctctcatctcacacttaccaatgtctttacccacttgcccgcacgaatggctc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35462408 |
aaagtcagctacgaaacacgaggtctgccttcatcttactacccgtcctctcatctcgcacttaccaatgtctttacccacttgcccgcacgaatggctc |
35462309 |
T |
|
| Q |
417 |
tgtcagtacttgcacgtgtgtctctcattcttttcannnnnnnatcttactctctatattttgtgggtccctttgaccactgggcaaaatgtcata |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
35462308 |
tgtcagtacttgcacgtgtgtctctcattcttttcatttttttatcttactctctatattttgtgggtccctttgactact-ggcaaaatgtcata |
35462214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 35463041 - 35462996
Alignment:
| Q |
14 |
tccactatttttgtgtaaaatttgtttgaatcgtgacttttaacat |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35463041 |
tccactatttttgtgtaaaatttgtttgaaacgtgacttttaacat |
35462996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University