View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4608-Insertion-4 (Length: 597)
Name: NF4608-Insertion-4
Description: NF4608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4608-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 182 - 503
Target Start/End: Complemental strand, 48267257 - 48266932
Alignment:
| Q |
182 |
gttaacaatacataccacgttgttaagatatgcacgccaaaactgacacttgaggttgctttttgatagctttcaaattaaatgaaggtaattaattaat |
281 |
Q |
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| T |
48267257 |
gttaacaatacataccacgttgttaagatatgcacgccaaaactgacacttgaggttgctttttgatagctttcaaattaaatgaaggtaattaattaat |
48267158 |
T |
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| Q |
282 |
gtcttggttggttcggttcagttgagataaaataaaagagagaagca---tagctagaccatagtgt-------gctgtgtgctgcaatgcaaaactagt |
371 |
Q |
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| T |
48267157 |
gtcttggttggttc-----agttgagataaaataaaagagagaagcagcatagctagaccatagtgtatagtgtgctgtgtgctgcaatgcaaaactagt |
48267063 |
T |
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| Q |
372 |
tactacttctctttaccattttttcattttcatcatcacttgtgtctttttcataagtagacagttggcaaaagcaatttttgctttgtcatccccacaa |
471 |
Q |
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| T |
48267062 |
tactacttctctttaccattttttcattttcatcatcacttgtgtctttttcataagtagacagttggcaaaagcaatttttgctttgt-atccccacaa |
48266964 |
T |
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| Q |
472 |
aatcacaactaactatattaggataaattcca |
503 |
Q |
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| T |
48266963 |
aatcacaactaactatattaggataaattcca |
48266932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 48267431 - 48267285
Alignment:
| Q |
8 |
gttttataatgcttgtaacattcaacattaccacttttttgatgttgttgcttgctatgatacactttcctaatacattagtgtctttaattttagatga |
107 |
Q |
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| T |
48267431 |
gttttataatgcttgtaacattcaacattaccacttttttgatgttgttgcttgctatgatacactttcctaatacattagtgtctttaattttagatga |
48267332 |
T |
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| Q |
108 |
gaaagtatgtaccacaacattgaatttctgggatggtatgcactgtg |
154 |
Q |
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| T |
48267331 |
gaaagtatgtaccacaacattgaatttctgggatggtatgcactgtg |
48267285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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