View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4608-Insertion-5 (Length: 504)

Name: NF4608-Insertion-5
Description: NF4608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4608-Insertion-5
NF4608-Insertion-5
[»] chr4 (1 HSPs)
chr4 (8-504)||(54430651-54431147)


Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 8 - 504
Target Start/End: Original strand, 54430651 - 54431147
Alignment:
Q  8 gatgtgagttcatgattttcgcagcagtaagcagtttggtgagtatatatgcaagttggtctgttatgcatacatgtgaattcattttggattcctccat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54430651 gatgtgagttcatgattttcgcagcagtaagcagtttggtgagtatatatgcaagttggtctgttatgcatacatatgaattcattttggattcctccat 54430750  T
Q  108 ttacccaccattcatttagagttatactcctataaggaatatatttgtcttttaatcgtttttataaatttctctctacttatttttctattcatccaaa 207  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54430751 ttactcaccattcatttagagttatactcctataaggaatatatttgtcttttaatcgtttttataaatttctctctacttatttttctattcatccaaa 54430850  T
Q  208 caatacaaactaatggaattcactttaattagcacttctcactaatggagttcatcaatcttctaattgtgtctatctctctcataaatgaacaataatc 307  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  54430851 caatacaaactaaaggaattcactttaattagcacttctcactaatggagttcatcaatcttctaattgtgtctatctctctcataaatgaacaatagtc 54430950  T
Q  308 tagatgtggggtaaatgaatggaatctcaactcaagaaacacacaattgattatcttgaacttgttactaaacaaatgttaatccactagtccatatttg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54430951 tagatgtggggtaaatgaatggaatctcaactcaagaaacacacaattgattatcttgaacttgttactaaacaaatgttaatccactagtccatatttg 54431050  T
Q  408 ctccatttagtcctgttcacttcatatatgcaaaacattgaggacaatccatatacacttcttctcaaaaaatggaggacaatccatatacacttat 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54431051 ctccatttagtcctgttcacttcatatatgcaaaacattgaggacaatccatatacacttcttctcaaaaaatggaggacaatccatatacacttat 54431147  T

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