View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4608-Insertion-6 (Length: 645)
Name: NF4608-Insertion-6
Description: NF4608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4608-Insertion-6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 105 - 645
Target Start/End: Original strand, 18943432 - 18943975
Alignment:
| Q |
105 |
ttatgattcaacctcgacagcctgactctcaccacgtcaattactgattgccatgttgaatttatcctctatcaatatgccatccaggatttgtcttcct |
204 |
Q |
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| T |
18943432 |
ttatgattcaacctcgacagcctgactctcaccgcgtcaattacagattgccacgttgagtttatccgctatcaagatgccatccagaatttgccttcct |
18943531 |
T |
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| Q |
205 |
gtgataaacgccgattgtgtttctgagataattgtgccaaccacctttttaagtctattcgctagaacctttgctattaccttgtatatacactcaatca |
304 |
Q |
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| T |
18943532 |
gcgataaacgtcgattgtgtttctgagataattgtgccagccacctttttaagtctatttgctagaacctttgctattaccttgtatatacactcaatca |
18943631 |
T |
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| Q |
305 |
aggagatcggtctaaaatgcgacaggttaaccggattctttttcttctaatgtgctaatttaatcaatg-aaataattatcagaacattttattgtgaga |
403 |
Q |
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| T |
18943632 |
aggagatcggtctaaaatgcgacaagttaaccggattctttttcttctaatgtgctaattaaatcaatgaaaataattatcagaacattttattgtgaga |
18943731 |
T |
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| Q |
404 |
aattaattaacaggggtttggggtataatagtgtttgcctgtttggtacaatgatagaaatacaaggaaaatgtacttctccgatccatcattt-caaga |
502 |
Q |
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| T |
18943732 |
aattaattaacaggggtttggggtataatagtgcttgcctgtttggtacaatgataaaaatacaaggaaaatgtacttctccgatccgtcatttccaaga |
18943831 |
T |
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| Q |
503 |
gcaggtttaccaaaagcatctgaatgagatgac-aatgatcttttaagcttaattacaagtatgggttcaaatctaacgttagaaacgcagcagttttaa |
601 |
Q |
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| T |
18943832 |
gcaggtttaccaaaagcatttgaatgagatgacaaatgatcttttaagcttaattacaggtatgggttcaaatctaacgttagaaatgcagcagttttaa |
18943931 |
T |
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| Q |
602 |
atatgttttggcattcacagaggtcttatctgacgagtgattag |
645 |
Q |
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| T |
18943932 |
atatgttttggcattcacagaggtcttatctgacgagcgattag |
18943975 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 21459739 - 21459808
Alignment:
| Q |
40 |
aatagactgggatatctgacaagaccgttttaattataaccacacgacctctgatggataacttcttatg |
109 |
Q |
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| T |
21459739 |
aatagactgtgatagctgacaagaccaattttattataaccacacaaccaccgatagataacttcttatg |
21459808 |
T |
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