View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4608-Insertion-7 (Length: 344)
Name: NF4608-Insertion-7
Description: NF4608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4608-Insertion-7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 32 - 344
Target Start/End: Original strand, 6769738 - 6770059
Alignment:
| Q |
32 |
gaaaaaattagggccccctacggccggccctgtttactggcatgttttttaagtaatgccgatatatctttcttgttcttactcatctttcatatgttat |
131 |
Q |
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| T |
6769738 |
gaaaaaattagggcccc-tacagccggccctgtttactggcatgctttttaagtaatgccgatatatctttcttgttcttacttatctttcatatgttat |
6769836 |
T |
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| Q |
132 |
caacaacttcactctatataattaatagttatttattctctnnnnnnnntcacaaactaaacattcaagatatccgcgcaactgcaggattatatctagt |
231 |
Q |
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| T |
6769837 |
caacaacttcactctatataattaatagttatttattctctaaaaaaaatcac-aactaagcattcaagatatccgcgcaaccgcaggattatatctagt |
6769935 |
T |
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| Q |
232 |
ttttctattcattgcacacct-----------ttttctnnnnnnnntatcttttctatttaatatttctttgtaacaaaagtcaaacaatggaatagtta |
320 |
Q |
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| T |
6769936 |
ttttctattcattgcacaccttttcgtttggcttttctaaaaaaaatatattttctatttaatatttctttgtaacaaaagtcaaacaatggaatagtta |
6770035 |
T |
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| Q |
321 |
gtttatttagttctatgctattat |
344 |
Q |
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| T |
6770036 |
gtttatttagttctatgctattat |
6770059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 6735157 - 6735196
Alignment:
| Q |
302 |
tcaaacaatggaatagttagtttatttagttctatgctatt |
342 |
Q |
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| T |
6735157 |
tcaaacaatggaatagtttgtttatttagtt-tatgctatt |
6735196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 3067378 - 3067323
Alignment:
| Q |
119 |
tttcatatgttatcaacaacttcactctata--taattaatagttatttattctct |
172 |
Q |
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| T |
3067378 |
tttcacatgttatcaacaacttgactatataaataattaatagttatttattctct |
3067323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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