View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4608_low_1 (Length: 419)
Name: NF4608_low_1
Description: NF4608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4608_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 5365174 - 5364785
Alignment:
| Q |
18 |
caaggctggttagctgtgaatggatcttcgagaaaaaggaaggcattcagcaagtttgacaaggaagatttaaggcacaacttatttctcaaggctttaa |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5365174 |
caaggctggttagctgcgaatggatcttcgagaaaaaggaaggcattcagcaagttggacaaggaagatttaaggcacaacttatttctcaaggctttaa |
5365075 |
T |
|
| Q |
118 |
aaaaggagggaactgatttcaattttcaatggtgtctcataatattgttaaacacaaagcagtcacaattttgtgtgccatggtagctgaatttgactta |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5365074 |
aaaaggagggaattgatttcaattttcaatggtgtctcgtaatattgttaaacacaaagcagtcacagttttgtgtgccatggtagctgaatttgactta |
5364975 |
T |
|
| Q |
218 |
gagttggactacatggatgtnnnnnnnttcatttttgtatagtgagctcaaagaaacaaatatgat----atatctaagagttttgaatttagaggtaaa |
313 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
5364974 |
gagttggactacatggatgtaaaaaaattcatttttgtatagtgagctcgaagaaacaaatatgatgaaacaatctaagggttttgaatttagaggtaaa |
5364875 |
T |
|
| Q |
314 |
gaggaattagtttacaatctatataaggctctttatggctttaaacaatcttctagacaatagaataaaggatttgattatatcgatgat |
403 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5364874 |
gagcaattagtttgcaatctatataaggctctttatggccttaaacaatcttctagacaatagaataaaggatttgattatatcaatgat |
5364785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University