View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4608_low_3 (Length: 238)
Name: NF4608_low_3
Description: NF4608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4608_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 47425344 - 47425225
Alignment:
| Q |
1 |
tttaaaagagcaacggagataacacggcgcttctatgaaccaagacagagcgattgaacttcaaactttatttgacaaattgaaggtgtgtttctcaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47425344 |
tttaaaagagcaacggagataacacggcgtttctatggaccaagacaaagcgattgaacttcaaactttatttgacaaattgaaggtgtgtttctcaaat |
47425245 |
T |
|
| Q |
101 |
cagtttcactatcatgtcat |
120 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
47425244 |
cagtttcactatcatgtcat |
47425225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 47424769 - 47424720
Alignment:
| Q |
174 |
catgttactaagttttttgtcttgtcaattttgatgtcatttgttctaga |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47424769 |
catgttactaagttttttgtcttgtcaattttgatgtcatttgttctaga |
47424720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 223
Target Start/End: Complemental strand, 47419681 - 47419516
Alignment:
| Q |
57 |
aacttcaaactttatttgacaaattgaaggtgtgtttctcaaatcagtttcactatcatgt-catggtccctctcttctgtgctaaaaaatattaaagtt |
155 |
Q |
| |
|
||||||||||||||||| | |||||||||||| ||||||||| ||||||||||||||||| | | ||| ||||||| ||||| ||| || ||||||| |
|
|
| T |
47419681 |
aacttcaaactttatttaataaattgaaggtgggtttctcaatccagtttcactatcatgtcctttttccatctcttccgtgct--aaactactaaagtt |
47419584 |
T |
|
| Q |
156 |
tttagcgcagggctttgccatgttactaagttttttgtcttgtcaattttgatgtcatttgttctaga |
223 |
Q |
| |
|
| | | ||| ||||| ||| ||||||||||||| || |||||||||||| ||||||| ||| |||| |
|
|
| T |
47419583 |
tgttgtgcaaggcttgttcatattactaagtttttggttttgtcaattttgttgtcattcgttataga |
47419516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 47408471 - 47408287
Alignment:
| Q |
42 |
aagacagagcgattgaacttcaaactttatttgacaaattgaaggtgtgtttctcaaatcagtttcactatcatgtc-atggtccctctcttctgtgcta |
140 |
Q |
| |
|
|||||| ||| |||||||||||||||||| | || ||||||||||| ||||||||||| |||||| |||||||||| | ||||| |||| ||||||| |
|
|
| T |
47408471 |
aagacaaagccattgaacttcaaactttaatggaaaaattgaaggtctgtttctcaaaccagtttggctatcatgtcttttttccctttcttttgtgcta |
47408372 |
T |
|
| Q |
141 |
aa--aaatattaaagtttttagcgcagggctttgccatgttactaagttttttgtcttgtcaattttgatgtcatttgttctaga |
223 |
Q |
| |
|
|| | | |||||||| | | || |||||| ||| ||||||| ||||| || |||||||||||| |||||||||||||||| |
|
|
| T |
47408371 |
aactactaactaaagtttgttgtgcgaggctttttcatattactaaatttttggttttgtcaattttgttgtcatttgttctaga |
47408287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 223
Target Start/End: Complemental strand, 47422153 - 47421988
Alignment:
| Q |
57 |
aacttcaaactttatttgacaaattgaaggtgtgtttctcaaatcagtttcactatcatgt-catggtccctctcttctgtgctaaaaaatattaaagtt |
155 |
Q |
| |
|
||||||||||||||||| | |||||||||||| |||||||||| ||||||||| ||||||| | | ||||||||||| ||||| || || ||||||| |
|
|
| T |
47422153 |
aacttcaaactttatttaataaattgaaggtgggtttctcaaaccagtttcaccatcatgtcctttttccctctcttccgtgct--taactactaaagtt |
47422056 |
T |
|
| Q |
156 |
tttagcgcagggctttgccatgttactaagttttttgtcttgtcaattttgatgtcatttgttctaga |
223 |
Q |
| |
|
| | | ||| ||||| ||| | ||||||||||| || |||||||||||| ||||||| ||| |||| |
|
|
| T |
47422055 |
tgttgtgcaaggcttgttcatatcactaagtttttggttttgtcaattttgttgtcattcgttataga |
47421988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 47391316 - 47391256
Alignment:
| Q |
57 |
aacttcaaactttatttgacaaattgaaggtgtgtttctcaaatcagtttcactatcatgtc |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
47391316 |
aacttcaaactttatttaacaaattgaaggtgggtttctcaaaccagtttca-tatcatgtc |
47391256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 46796002 - 46796047
Alignment:
| Q |
178 |
ttactaagttttttgtcttgtcaattttgatgtcatttgttctaga |
223 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
46796002 |
ttactaagctttttgttttgtcaattttcatgtcatttgttctaga |
46796047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University