View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4609-Insertion-1 (Length: 613)
Name: NF4609-Insertion-1
Description: NF4609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4609-Insertion-1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 328 - 613
Target Start/End: Complemental strand, 2239837 - 2239552
Alignment:
| Q |
328 |
attcttagggtaacaatccaagaggatagaaagatataaatactaaagacagaaaaactacctttaatataatttaacatatataatcacagacatctac |
427 |
Q |
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| T |
2239837 |
attcttagggtaacaatacaagaggatagaaagatataaatactaaagacacaaaaactacctttaatacaatttaacatatataatcatagacatctac |
2239738 |
T |
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| Q |
428 |
tgatatacaaaacatttacaatttatcccctaaaatatggatcacttagaaatgaattggagaaagtccctccaatattagggaaaagggtgagaaaaca |
527 |
Q |
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| T |
2239737 |
tgatatacaaaacatttacaatttatcccctaaaatatggatcacttagaaatgaattggagaaagtccctccaatattagggaaaagggtgagaaaaca |
2239638 |
T |
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| Q |
528 |
tatcaagccaagaacaataccccaagcatatctgctttcccctagaggtgtgatttcatcttttgcaggaatttcttctcctcccc |
613 |
Q |
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| T |
2239637 |
tatcaagccaagaacaataccccaagcatatctgctttcccctagaggggtgatttcatcttttgcaggaatttcttctcctcccc |
2239552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 2240144 - 2239870
Alignment:
| Q |
8 |
ggactttggtcacccccactcaaattccaaattactgggatctctttccccgagagccagaagagtaagaccaacataaaaactcaaccaaccctaaaat |
107 |
Q |
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| T |
2240144 |
ggactttggtcacccccactcaaattccagattactaggatctctttccccgagagccagaagagtaagaccaaca-aaaaactcaaccaaccctaaaaa |
2240046 |
T |
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| Q |
108 |
taaatgagtacatgggcataattaaagctaacattgttctaaagatggacatggacaggggtaaaagattattacatgcttgttttcaacatttaattac |
207 |
Q |
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| T |
2240045 |
taaatgagtacacgggcataattaaagctaacattgttctaaagatggacatggacaggggaaaaagattattacatgcttgttttcaacatttaattac |
2239946 |
T |
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| Q |
208 |
catcttgaattgaagtttatgattacattaggatagagtagtacaactgtacaaggtgttaacaatggtgatatat |
283 |
Q |
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| T |
2239945 |
catcttgaattgaagtttatgattacattatgagagagtagtacaactgtacaaggtgttaacaatggtgatatat |
2239870 |
T |
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