View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4609-Insertion-2 (Length: 449)
Name: NF4609-Insertion-2
Description: NF4609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4609-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 6409332 - 6408952
Alignment:
| Q |
10 |
tgaatcctattctcatgtcactattaat--gttacttttgtataccaaagttttggtgaatccttcaatgagttcagaacattttgtgaaggcatgtatt |
107 |
Q |
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| T |
6409332 |
tgaatcctattctcatgtcactattaatttgttacttttgtataccaaagttttggtgaatccttcaatgagtacagaacattttgtgaaggcatgtatt |
6409233 |
T |
|
| Q |
108 |
tcatcaaaattacacaaagacttctacttacaccaaagcaatatgaaaccaatttttgagttgaatttaaaaccataaccacaccccctacaaatcagtt |
207 |
Q |
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| T |
6409232 |
tcatcaaaactacacaaagacttctacttacaccaaagcaatatcaaaccaatttttgagttggatttaaaaccataaccacaccccctacaaatcagtt |
6409133 |
T |
|
| Q |
208 |
tggttatgggaatcagtttaaaaactannnnnnnnnncttccaaaacctggcgtgaacttagtaattgattgttgtaaactactaatttgtacaaaacca |
307 |
Q |
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| T |
6409132 |
tggttatggaaatcagtttaaaaact--tttttttttcttccaaaacctggtgtgaacttagtaattgattgttgtaaactactaatttgtacaaaacca |
6409035 |
T |
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| Q |
308 |
ggtttaaaatttccagttttaacactgcaaacttcttgtttcttattcgccattcatcttaacaaatgagtatggcagacata |
390 |
Q |
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| T |
6409034 |
ggtttaaaatttcaagttttaacactgcaaacttcttgtttcttattcgccattcatcttaacaaatgagtatgacagacata |
6408952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 7 - 374
Target Start/End: Complemental strand, 6412086 - 6411726
Alignment:
| Q |
7 |
agttgaatcctattctcatgtcactattaat--gttacttttgtataccaaagttttggtgaatccttcaatgagttcagaacattttgtgaaggcatgt |
104 |
Q |
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| T |
6412086 |
agttgaatcctattctcatgtcactattaatttgttacttttgtataccaaagttttggcgaatccttcaatgagtacagaacattttgtgaaggcatat |
6411987 |
T |
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| Q |
105 |
atttcatcaaaattacacaa----agacttctacttacaccaaagcaatatgaaaccaatttttgagttgaatttaaaaccataaccacacccccta-ca |
199 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||||| || || || | |
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| T |
6411986 |
atttcatcaaaactacacaaagacagacttctacttacaccaaagcaatatcaaaccaa--attgagttggattt-aaaccataaccaaactccttataa |
6411890 |
T |
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| Q |
200 |
aatcagtttggttatgggaatcagtttaaaaactannnnnnnnnncttccaaaacctggcgtgaacttagtaattgattgttgtaaactactaatttgta |
299 |
Q |
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| T |
6411889 |
aatcag-gtggttttaggaatcagtttaaaaactattttttt----ttccaaagcctggtgtgaacttagtaactggtttttgtaacctacgaatatgta |
6411795 |
T |
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| Q |
300 |
caaaaccaggtttaaaatttccagttttaacactgcaaacttcttgtttcttattcgccattcatcttaacaaat |
374 |
Q |
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| T |
6411794 |
caaaaccaggtttaaaatatccagtttta------catacttcttgtttcttatttgccacccatcttaaaaaat |
6411726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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