View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4609-Insertion-4 (Length: 317)
Name: NF4609-Insertion-4
Description: NF4609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4609-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 317
Target Start/End: Complemental strand, 2820264 - 2819954
Alignment:
| Q |
7 |
atatatatgtatttgattttccttgatatcagatacaaagtttatattgaaggatacgcgtggtctgtgagtgagaaatacattctagcctgtgattccc |
106 |
Q |
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| T |
2820264 |
atatgtatgtatttgattttccttgatatcagatacaaagtttatattgaaggatacgcgtggtctgtgagtgagaaatacattctagcctgtgattccc |
2820165 |
T |
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| Q |
107 |
ctgcactattagtgaagcctcgttactacgatttcttcacacgaagcctacaaccattgcaacattattggcctataagggacactgacaaatgcaaatc |
206 |
Q |
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| T |
2820164 |
ctgcactattagtgaagcctcgttactacgatttcttcacacgaagcctacagccattgcaacattattggcctataagggacactgacaaatgcaaatc |
2820065 |
T |
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| Q |
207 |
catcaaacatgcagttgattggggaaataatcatgagcaaaaagtgagtctcactccatcgcacatctttttcaattccttgtcattcatatcttaaaag |
306 |
Q |
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| T |
2820064 |
catcaaacatgcagttgattggggaaataatcatgagcaaaaagtgagtctcactccatcgcacatctttttcaattccttgtcattcatatcttaaaag |
2819965 |
T |
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| Q |
307 |
tccatatactg |
317 |
Q |
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| T |
2819964 |
tccatatactg |
2819954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 193657 - 193547
Alignment:
| Q |
37 |
agatacaaagtttatattgaaggatacgcgtggtctgtgagtgagaaatacattctagcctgtgattcccctgcactattagtgaagcctcgttactacg |
136 |
Q |
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| T |
193657 |
agatacaaggtttacattgaaggttctgcttggtccgtgagtgaaaaatacatcctagcatgtgattctcccactttacttgtgaaacctcattactatg |
193558 |
T |
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| Q |
137 |
atttcttcaca |
147 |
Q |
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| T |
193557 |
atttcttcaca |
193547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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