View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4609_low_3 (Length: 356)
Name: NF4609_low_3
Description: NF4609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4609_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 10279830 - 10280177
Alignment:
| Q |
1 |
aagaagaagatcgaaccatacatgccaaatttcaagttagcgttcgatcaattttgcatgcatacgggcggtagagcagttcttgatcggatgcaaaaga |
100 |
Q |
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| T |
10279830 |
aagaagaagatcgaaccatacatgccaaatttcaagttagcgttcgatcaattttgcatgcatacgggcggtagagcagttcttgatcggatgcaaaaga |
10279929 |
T |
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| Q |
101 |
gtcttgagcttgatgattttcatatggagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtctgattg |
200 |
Q |
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| T |
10279930 |
gtcttgagcttgatgattttcatatggagccttcaagaatgacactatatagatatggtaacacatcatcaagttctgtttggtatgaattgtcttattg |
10280029 |
T |
|
| Q |
201 |
tgaagctaaggggagagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaat |
300 |
Q |
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| T |
10280030 |
tgaagctaaggggagagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaat |
10280129 |
T |
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| Q |
301 |
gttgatcctaaatcattgaaaaatgcttggatggatgagattgatgat |
348 |
Q |
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| T |
10280130 |
gttgatcctaaatcattgaaaaatgcttggatggatgagattgatgat |
10280177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 127 - 309
Target Start/End: Complemental strand, 27776601 - 27776419
Alignment:
| Q |
127 |
gagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtctgattgtgaagctaaggggagagttaaaaagg |
226 |
Q |
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| T |
27776601 |
gagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaaag |
27776502 |
T |
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| Q |
227 |
gacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcct |
309 |
Q |
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| T |
27776501 |
gtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcct |
27776419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 114 - 308
Target Start/End: Complemental strand, 19742975 - 19742781
Alignment:
| Q |
114 |
tgattttcatatggagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtctgattgtgaagctaagggg |
213 |
Q |
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| T |
19742975 |
tgattttcaattagagccttcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaagga |
19742876 |
T |
|
| Q |
214 |
agagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcc |
308 |
Q |
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| T |
19742875 |
agaataagaaaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttggtgtgcattaaggaatgttgatcc |
19742781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 114 - 308
Target Start/End: Original strand, 19797113 - 19797307
Alignment:
| Q |
114 |
tgattttcatatggagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtctgattgtgaagctaagggg |
213 |
Q |
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||||||||| | |||||||||| |||||||| ||||||||||| ||||| ||| ||||||||||||||||| ||| | ||||||||||||| || |
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| T |
19797113 |
tgattttcaattagagccttcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaagga |
19797212 |
T |
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| Q |
214 |
agagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcc |
308 |
Q |
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| T |
19797213 |
agaataagaaaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttggtgtgcattaaggaatgttgatcc |
19797307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 308
Target Start/End: Complemental strand, 19539932 - 19539738
Alignment:
| Q |
114 |
tgattttcatatggagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtctgattgtgaagctaagggg |
213 |
Q |
| |
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||||||||| | |||||||||| |||||||| ||||||||||| ||||| ||| |||| |||||||||||| ||| | ||||||||||||| || |
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| T |
19539932 |
tgattttcaattagagccttcaaagatgacactttatagatatggtaacacttcaagtagttttgtttggtatgagttggcatattgtgaagctaaagga |
19539833 |
T |
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| Q |
214 |
agagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcc |
308 |
Q |
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| T |
19539832 |
agaataagaaaaggtgataggatttggcaaattgcatttgggtctagatttaagtgtaacactgctgtttggtgtgcattaaagaatgttgatcc |
19539738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 308
Target Start/End: Complemental strand, 19671855 - 19671661
Alignment:
| Q |
114 |
tgattttcatatggagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtctgattgtgaagctaagggg |
213 |
Q |
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||||||||| | |||||||||| |||||||| ||||||||||| ||||| ||| ||||||||||||||||| ||| | ||||||||||||| || |
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| T |
19671855 |
tgattttcaattagagccttcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaagga |
19671756 |
T |
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| Q |
214 |
agagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcc |
308 |
Q |
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| T |
19671755 |
agagtatgaaaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactcctgtttggtgtgcattaaggaatgttgatcc |
19671661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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