View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4610-Insertion-11 (Length: 198)
Name: NF4610-Insertion-11
Description: NF4610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4610-Insertion-11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 11589283 - 11589092
Alignment:
| Q |
7 |
agttttcttccctttattctcaccttctgatatgttcacaacttgaaaatcatcagcattagcaggaatttctataataattagattatcaatttccatt |
106 |
Q |
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| T |
11589283 |
agttttcttccctttattctcaccttctgaaatgttcacaatttgaaaatcatcagcattagcaggaatttctatgataattagattatcaatttccatt |
11589184 |
T |
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| Q |
107 |
ttccaaggcctcaaataatttttgctcaacttcatcctgaggaatatggcccatgattgctccaaaaaatctctattcttgatctctagcta |
198 |
Q |
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| T |
11589183 |
ttccaaggcctcaaataatttttgctcaacttcatcctcaagaatatggcccatgattgctccaaaaaatctctattcttgatctctagcta |
11589092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 11601868 - 11601677
Alignment:
| Q |
7 |
agttttcttccctttattctcaccttctgatatgttcacaacttgaaaatcatcagcattagcaggaatttctataataattagattatcaatttccatt |
106 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11601868 |
agttttcttccctttattctcaccttctgaaatgttcacaatttgaaaatcatcagcattagcaggaatttctatgataattagattatcaatttccatt |
11601769 |
T |
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| Q |
107 |
ttccaaggcctcaaataatttttgctcaacttcatcctgaggaatatggcccatgattgctccaaaaaatctctattcttgatctctagcta |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11601768 |
ttccaaggcctcaaataatttttgctcaacttcatcctcaagaatatggcccatgattgctccaaaaaatctctattcttgatctctagcta |
11601677 |
T |
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