View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4610-Insertion-2 (Length: 856)
Name: NF4610-Insertion-2
Description: NF4610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4610-Insertion-2 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 40 - 525
Target Start/End: Complemental strand, 23918719 - 23918230
Alignment:
| Q |
40 |
ataagagggtgggagaagagccaacatttatatagaagttttgatgtaggtgaacctgttggtttactctgtcaaaataaggaattagagtttaatgaag |
139 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23918719 |
ataagagggtgggagaagagccatcatttatatagaagttttgatttaggtgaacctattggtttactctgtcaaaataagaaattagagtttaatgaag |
23918620 |
T |
|
| Q |
140 |
ttatgatttaggtgaagaaacaactttgtcttcaatttttgcaggagattagtaaattcagataaacatggagtaatgatataggtgaaaaacagttttg |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
23918619 |
ttatgatttaggtgaagaaacaactttgtcttcaatttttgcaggagattagtaaattcagataaacatggagtaatgatataggtgaaaaacagctttg |
23918520 |
T |
|
| Q |
240 |
tcttcaaagtttgaaa--agatttgaaaaaatcatataagcatggatttatgatggggaaggtatagttcataatcaagggc-aaaaaagagaaattggg |
336 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
23918519 |
tcttcaatgtttgaaaggagatttgaaaaaatcatataagcatggacttatgatggggaaggtatagtccataatcaagggcaaaaaaagagaaattggg |
23918420 |
T |
|
| Q |
337 |
-aaaaaacaaaccttggaagtgaaaatcgattcctagaagctaggaatagcagtttatgtgaaaatagcttcagcatggtcaaaagcacagcagcaacat |
435 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
23918419 |
aaaaaaacaaacataggaagtgaaaatcgattcctagaagctaggaatagcagcttctgtgaaaatagcttcagcctggtcaaaagcacagcagcaacat |
23918320 |
T |
|
| Q |
436 |
aagggtgaaagataaccaaacatcacaaaattgcttttgagaaaatgaaagtgcttttgcacttttctaccgggtaaccaaacacccact |
525 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23918319 |
aagggtgaaagataaccaaacatcacaaaattacttttgagaagatgaaagtgcttttgcacttttctaccgggtaaccaaacacccact |
23918230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 415 - 528
Target Start/End: Original strand, 10854014 - 10854127
Alignment:
| Q |
415 |
tcaaaagcacagcagcaacataagggtgaaagataaccaaacatcacaaaattgcttttgagaaaatgaaagtgcttttgcacttttctaccgggtaacc |
514 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| ||| | ||||||||| |
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| T |
10854014 |
tcaaaagcacgacaacaacataagggtgaaagataaccaaacattataaaattgcttttgagaaaatgaacgtgcttttgcaccttttcatcgggtaacc |
10854113 |
T |
|
| Q |
515 |
aaacacccactaaa |
528 |
Q |
| |
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|||||||||||||| |
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|
| T |
10854114 |
aaacacccactaaa |
10854127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 7009099 - 7008984
Alignment:
| Q |
117 |
taaggaattagagtttaatgaagttatgatttaggtgaagaaacaactttgtcttcaatttttg-caggagattagtaaattcagataaacatggagtaa |
215 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| |||| || |||||||||||||| |||||| ||| |||| | |
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| T |
7009099 |
taaggaatttgagtttaatgaatttatgatttaggtgaagaaacatctttgtcttcaatgtttgacaagagattagtaaatttagataagcatagagtta |
7009000 |
T |
|
| Q |
216 |
tgatataggtgaaaaa |
231 |
Q |
| |
|
| ||| |||||||||| |
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|
| T |
7008999 |
ttatacaggtgaaaaa |
7008984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 528 - 856
Target Start/End: Original strand, 1166952 - 1167290
Alignment:
| Q |
528 |
atatgactactagcaaaataaagtcatttgttaggttttaaactaatttttaatttactaaaataaacaaataaagatgcaaagnnnnnnnctcagaatg |
627 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
1166952 |
atatgactactagcaaaataaagtcatttgttaggttttaaactaatttttaattaactaaaataaacaaataaagatgcaaagtttttttatcagaatg |
1167051 |
T |
|
| Q |
628 |
atgatgaaggtgagagatagagtttttgagca---------ctactaaacagaatatcaaagaaggaaaggggaagatcatcatgatggtcaatagtgga |
718 |
Q |
| |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
1167052 |
atgatgaaggtgagagatagagtttttgagcatgttgagaactgctaaacagaatatcaaaaaaggaaaggggaagatcatcatgatggtcaaaagtgga |
1167151 |
T |
|
| Q |
719 |
aagttcaataagtagtacaagaaatctaaacataagagtaacaggaagggcacgaaagttgccaagcccaaacctgctacccatgctttgaagcctc-aa |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |
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| T |
1167152 |
aagttcaataagtagtacaagaaatctaaacataagagtaacaggaagggcacgaaagttgccaagcccaaacctgctacccatgcttcgaagtctctaa |
1167251 |
T |
|
| Q |
818 |
ggcagtgggggctaaggaggacacatgtttccagtgcag |
856 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
1167252 |
ggcagtgggggctaaggaggacacatgtttccagtgcag |
1167290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 117 - 256
Target Start/End: Complemental strand, 4342025 - 4341883
Alignment:
| Q |
117 |
taaggaattagagtttaatgaagttatgatttaggtg-aagaaacaactttgtcttcaatttttg-caggagattagtaaattcagataaacatggagta |
214 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||| |||| || ||||||| |||||| | |||| ||| |||| |
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|
| T |
4342025 |
taaggaattagagtttaatgaatttatgatttaggtgaaagaaacatctttgtcttcaatgtttgacaagagattaataaatttatataagcatagagtt |
4341926 |
T |
|
| Q |
215 |
atgatataggtg-aaaaacagttttgtcttcaaagtttgaaaa |
256 |
Q |
| |
|
|| ||| ||||| |||||||| |||| |||||| ||||||||| |
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|
| T |
4341925 |
attatacaggtgaaaaaacagctttgccttcaatgtttgaaaa |
4341883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 325 - 519
Target Start/End: Complemental strand, 37267260 - 37267081
Alignment:
| Q |
325 |
agagaaattgggaaaaaacaaaccttggaagtgaaaatcgattcctagaagctaggaatagcagtttatgtgaaaatagcttcagcatggtcaaaagcac |
424 |
Q |
| |
|
||||||||| || ||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
37267260 |
agagaaattagggaaaaacaaaccttagaattgaaaatcgattcctagaagctaggaatagcagcttctgtgaaaatagcttcagcatggtcaaaagcac |
37267161 |
T |
|
| Q |
425 |
agcagcaacataagggtgaaagataaccaaacatcacaaaattgcttttgagaaaatgaaagtgcttttgcacttttctaccgggtaaccaaaca |
519 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||| ||||| |||||||||||| ||| |||||||||||||||| |
|
|
| T |
37267160 |
gacagc---------------gataaccaaacatcacaaaattacttttgagaagatgaacgtgcttttgcaccttttcaccgggtaaccaaaca |
37267081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 289
Target Start/End: Complemental strand, 19644120 - 19644012
Alignment:
| Q |
184 |
gagattagtaaattcagataaacatggagtaatgatataggtg-aaaaacagttttgtcttcaaagttt--gaaaagatttgaaaaaatcatataagcat |
280 |
Q |
| |
|
|||||||||||||| |||||| ||| |||| || ||| ||||| |||||||| |||| |||||| |||| |||| |||||||||| ||| || | ||| |
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|
| T |
19644120 |
gagattagtaaatttagataagcatagagttattatacaggtgaaaaaacagctttgccttcaatgtttcaaaaaaaatttgaaaaattcagatcaacat |
19644021 |
T |
|
| Q |
281 |
ggatttatg |
289 |
Q |
| |
|
||||||||| |
|
|
| T |
19644020 |
ggatttatg |
19644012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 46954818 - 46954736
Alignment:
| Q |
127 |
gagtttaatgaagttatgatttaggtgaagaaa-caactttgtcttcaatttttg-caggagattagtaaattcagataaacatg |
209 |
Q |
| |
|
|||||||||||| ||||||| | |||||| ||| |||||||||||||||| |||| ||||||||||| ||||||||||||||| |
|
|
| T |
46954818 |
gagtttaatgaatttatgatatgggtgaacaaaacaactttgtcttcaatatttgacaggagattag--gattcagataaacatg |
46954736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 388
Target Start/End: Original strand, 22716033 - 22716112
Alignment:
| Q |
310 |
aatcaagggcaaaaaagagaaattgggaaaaaacaaacct-tggaagtgaaaatcgattcctagaagctaggaatagcag |
388 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| || |||||||| |||| |||||||||||||| |||| |
|
|
| T |
22716033 |
aatcaagggtaaaaaagagaaattgggggaaaacaaacctacggttgtgaaaattgatttttagaagctaggaattgcag |
22716112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 388
Target Start/End: Complemental strand, 22989184 - 22989105
Alignment:
| Q |
310 |
aatcaagggcaaaaaagagaaattgggaaaaaacaaacct-tggaagtgaaaatcgattcctagaagctaggaatagcag |
388 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| || |||||||| |||| |||||||||||||| |||| |
|
|
| T |
22989184 |
aatcaagggtaaaaaagagaaattgggggaaaacaaacctacggttgtgaaaattgatttttagaagctaggaattgcag |
22989105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 388
Target Start/End: Original strand, 28950290 - 28950369
Alignment:
| Q |
310 |
aatcaagggcaaaaaagagaaattgggaaaaaacaaacct-tggaagtgaaaatcgattcctagaagctaggaatagcag |
388 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| || |||||||| |||| |||||||||||||| |||| |
|
|
| T |
28950290 |
aatcaagggtaaaaaagagaaattgggggaaaacaaacctacggttgtgaaaattgatttttagaagctaggaattgcag |
28950369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 201727 - 201785
Alignment:
| Q |
118 |
aaggaattagagtttaatgaagttatgatttaggtg-aagaaacaactttgtcttcaat |
175 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||| || ||||| |||| |||||||| |
|
|
| T |
201727 |
aaggaattagagtttaatgaagttatgatatgggtgaaaaaaacacctttctcttcaat |
201785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 201602 - 201683
Alignment:
| Q |
15 |
ttccttttcttgcgactttgagagaat-aagagggtgggagaagagccaacatttatatagaagttttgatgtaggtgaacc |
95 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||| | |||| ||| |||||| |||| ||||||||||| |||||| |||| |
|
|
| T |
201602 |
ttccttttcttgcgtgtttgagagaatgaaaagggcgagagatgaggcaacatatataaagaagttttgaggtaggttaacc |
201683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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