View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4610-Insertion-3 (Length: 744)
Name: NF4610-Insertion-3
Description: NF4610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4610-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 61 - 646
Target Start/End: Original strand, 53941980 - 53942572
Alignment:
| Q |
61 |
caagctaaccggaggatgaaagtgccaacaacatcgcttatgagaaggatgacgagacgaggaggtggcgcctcatg-aagaaggaggccaacatcagaa |
159 |
Q |
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| T |
53941980 |
caagctaaccggaggatgaaagtgccaacaacatcgcttatgagaaggatgacgagacgaggaggtggcgcttcatggaagaaggaggccaacatcagaa |
53942079 |
T |
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| Q |
160 |
gaagttacaagtttcgatatgaaatctgcacattggttcccattaattttttaagtgtatgagaaaccgtaatgttactttgaaggtgcaaatattttat |
259 |
Q |
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| T |
53942080 |
gaagctacaagtttcgacatgaaatctgcacattggttccccttaattctttaagtgtatgagaaaccgtaatgttactttgaaggtgcaaatgttttat |
53942179 |
T |
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| Q |
260 |
gtcttaaataagaaccacatagatatggtaacagtcaatggggtcattaatcaaattaatgcaaacaggatagtctgaaccatgatagatagnnnnnnnn |
359 |
Q |
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| T |
53942180 |
gtcttaaataagaaccacatagatatggtaaccgtcaatggggtcattaatcaaattaatgcaaacaggataatctgaaccatgatagatag-aaaaaaa |
53942278 |
T |
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| Q |
360 |
ctcagcaaagcaagatatcat---------aaatataccttgaaaaaccggcaagaaacaaactagaattatagcaggagtaccaccctactctactagg |
450 |
Q |
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| T |
53942279 |
ctcagc-aagcaagatatcatctgaacctaaaatataccttgaaaaaccggcaagaaacaaactagaattatagcaggagtaccaccctactctactagg |
53942377 |
T |
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| Q |
451 |
aagtagtagtaaataagaagaaaggggtgaatgaaaaattaatttagtgtgaatagtgaggatacaccattgggtaagtcaaacttgcacacaacgatca |
550 |
Q |
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| T |
53942378 |
aagtagtagtaaataagaagaaa-gggtgaatgaaaaattaatttagtgtcaatagtgaggatacaccattggataagtcaaacttgcacacatcgatca |
53942476 |
T |
|
| Q |
551 |
ttccaatggttagaaatcattctctaccatgaccacattaaggtgtcccactatagaaacaagttgttatgaaatctaaaaactgaattctcttgt |
646 |
Q |
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| T |
53942477 |
ttccaatggttagaaatcattctctaccatgaccacattaaggtgtcccactatagaaacaagttgttatgaaatctaaaaactgaattctcttgt |
53942572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 672 - 740
Target Start/End: Original strand, 53942581 - 53942650
Alignment:
| Q |
672 |
tgattgtttcaccaagtagaaacaaagacacttatcg-aaacaagaacaagaagcagatgcagccacgaa |
740 |
Q |
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| T |
53942581 |
tgatagtttcaccaaatagaaacaaagacacttatcgaaaacaagaacaagaagcagatgcagccacgaa |
53942650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 130 - 331
Target Start/End: Original strand, 18888884 - 18889080
Alignment:
| Q |
130 |
gcctcatgaagaaggaggccaacatcagaagaagttacaagtttcgatatgaaatctgcacattggttcccattaattttttaagtgtatgagaaaccgt |
229 |
Q |
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| T |
18888884 |
gcctcacgaagaaggaggccaacatcagaagaagctccaagtttcatcatgaaatctgcactttggttcccatc-----tctaagcgtatgagaaaccgt |
18888978 |
T |
|
| Q |
230 |
aatgttactttgaaggtgcaaatattttatgtcttaaataagaaccacatagatatggtaacagtcaatggggtcattaatcaaattaatgcaaacagga |
329 |
Q |
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| T |
18888979 |
gatattactttgaagaagcaaattttttatgtattgaataagggccacatagacatggtacctctcaatggagccattaatcaaattaatgcaaacaaga |
18889078 |
T |
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