View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4610-Insertion-4 (Length: 610)

Name: NF4610-Insertion-4
Description: NF4610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4610-Insertion-4
NF4610-Insertion-4
[»] chr7 (1 HSPs)
chr7 (40-610)||(28185691-28186246)


Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 40 - 610
Target Start/End: Original strand, 28185691 - 28186246
Alignment:
Q  40 gttatcattcaatagttttgggttttatgtctaaatgtctaagttaagtaatgcgtccattattaaactgccatattaatatcttgatttccattcccta 139  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28185691 gttatcattcaatggttttgggttttatgtctaaatgtctaagttaagtaatgtgtccattattaaactgccatattaatatcttgatttccattcccta 28185790  T
Q  140 aacactttcaatatttaatgaacatgtacttgaactttgttgtacatgccaagttttttgtatcctatcatggttttataagttcctattagtttaacat 239  Q
    |||||||||||||||||||||||            || ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28185791 aacactttcaatatttaatgaac------------ttagttgtacgtgccaagttttttgtatcctatgatggttttataagttcctattagtttaacat 28185878  T
Q  240 cagaacaaaaagattaacgttagaattggggttagcttaaactttataaaattattttttaaggcgatgattattattttcatctataaacgtttgtttg 339  Q
     |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||  |   ||||||||||||||||||||    
T  28185879 tagaacaaaaatattaacgttagaattggggttagtttaaactttataaaattattttttaagacgatgattatcct---catctataaacgtttgtttg 28185975  T
Q  340 ttgagactgtatctcttccaacatgagactcttaacaataagttgattgaattagcaataagattttatttgaaaagcagtcaaaaggttttatttgttt 439  Q
    |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28185976 ttgagattgtatctcttccaacatgaaactcttaaaaataagttgattgaattagcaataagattttatttgaaaagcagtcaaaaggttttatttgttt 28186075  T
Q  440 cacttaattggaaatacgtaagaaagtttttgtttgaaaagcataaccaaacttttaaatcctctttaattgtttctttcacatcatggaaatgtgtcga 539  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||    
T  28186076 cacttaattggaaatacgtaagaaagtttttgtttgaaaagcataaccaaactttttaatcctcttaaattgtttctttcacattatggaaatgtgtcga 28186175  T
Q  540 cgtgtatgatttgaataagttcaattaagaaaatccttaacattgtcatgatgcttatagttttttaatat 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28186176 cgtgtatgatttgaataagttcaattaagaaaatccttaacattgtcatgatgcttatagttttttaatat 28186246  T

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