View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4610-Insertion-5 (Length: 493)
Name: NF4610-Insertion-5
Description: NF4610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4610-Insertion-5 |
 | |
|
| [»] scaffold0289 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0289 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 19850 - 20137
Alignment:
| Q |
8 |
agttatgagtgcacaaaagtacattgagaaaaacagccaaaagtgtacacacttcatcgactcaagtgttggaaatatggacacttagcttt-ggactga |
106 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| || |||| |
|
|
| T |
19850 |
agttatgagtgtacaaaagtacattgaggaaaacagccaaaagtgtacacacttcatggactcaagtgttggaaatatggacacttagtttttgggctga |
19949 |
T |
|
| Q |
107 |
agctgtgaaatctttagatagtttgatttggactggtttgttgtttgtaagtgttgcaaatatttatagctaaattttatgttgctgctataactaaaat |
206 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19950 |
agctgtgaaat-tttagatagttagatttggactggtttgttgtttgtaagtgttgcaaatatttatagctaaattttatgttgctgctatacctaaaat |
20048 |
T |
|
| Q |
207 |
aataatacgataatggtaatagtaagttaaaattcaatatataggtgaaaaattaattcctcgtagaaaaaagttggaaatttaataaa |
295 |
Q |
| |
|
||||||||| |||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20049 |
cataatacgagaatggtaatagtaagtaaaagtttaatatataggtgaaaaattaattcctcgtagaaaaaagttggaaatttaataaa |
20137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 335 - 468
Target Start/End: Original strand, 20137 - 20270
Alignment:
| Q |
335 |
attaagaaaaacaagggaagatacctaagagacataaaataaaatccacttatgtataaataagttatattagtagagtccccgtaaatttagcttagtt |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| || ||| ||||||| |||| |
|
|
| T |
20137 |
attaagaaaaacaagggaagatacctaagagacataaaataaaatccacttaagtataaataagatatattagtagagtctccataagtttagctcagtt |
20236 |
T |
|
| Q |
435 |
gatatggatatcatataatatatgtaaggatcgg |
468 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||| |
|
|
| T |
20237 |
ggtatggacatcatataatatatgtaaggatcgg |
20270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 9e-62; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 133 - 369
Target Start/End: Original strand, 15667068 - 15667293
Alignment:
| Q |
133 |
tttggactggtttgttgtttgt-aagtgttgcaaatatttatagctaaattttatgttgctgctataactaaaataataatacgataatggtaatagtaa |
231 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
15667068 |
tttggactggtttgttgtttgttaagtgttgcaaatatttatagctaaattttttgttgctgctataactaaaatcataatacgagaatggtaatagtaa |
15667167 |
T |
|
| Q |
232 |
gttaaaattcaatatataggtgaaaaattaattcctcgtagaaaaaagttggaaatttaataaacgtatattagtgtat--tgtttaatgatatttgtcc |
329 |
Q |
| |
|
||| ||||| |||||||||| ||||||| |||||||||||| ||||||| ||| | | ||||||||| |||||||||||||||||| |
|
|
| T |
15667168 |
gtttaaatttaatatataggagaaaaatcaattcctcgtag-aaaaagt-------------aacttttgttagtgtattgtgtttaatgatatttgtca |
15667253 |
T |
|
| Q |
330 |
ctttgattaagaaaaacaagggaagatacctaagagacat |
369 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15667254 |
ctttgattaagaaaaacaagggaaaatacctaagagacat |
15667293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 15666979 - 15667076
Alignment:
| Q |
8 |
agttatgagtgcacaaaagtacattgagaaaaacagccaaaagtgtacacacttcatcgactcaagtgttggaaatatggacacttagctttggactg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
15666979 |
agttatgagtgcacaaaagtacattgagaaaaacagccaaaagtgtacacacttcatcgactcaagtgttggaaatatgggcacttagttttggactg |
15667076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 15672254 - 15672337
Alignment:
| Q |
8 |
agttatgagtgcacaaaagtacattgagaaaaacagccaaaagtgtacacacttcatcgactcaagtgttggaaatatggacac |
91 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | || ||| ||||||||||||||||| |
|
|
| T |
15672254 |
agttatgagtggacaaaagtacattgagaaaaacagccaaaagagtacacacttcatggtctgaagcgttggaaatatggacac |
15672337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 15680474 - 15680527
Alignment:
| Q |
10 |
ttatgagtgcacaaaagtacattgagaaaaacagccaaaagtgtacacacttcat |
64 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15680474 |
ttatgagtggacaaaagtacattgagaaaaacagccaaaa-agtacacacttcat |
15680527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 47440756 - 47440809
Alignment:
| Q |
424 |
ttagcttagttgatatggatatcatataatatatgtaaggatcgggattcgaac |
477 |
Q |
| |
|
|||||| |||||||| ||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
47440756 |
ttagctcagttgataaggacaatatataatatatgtaaggttcgggattcgaac |
47440809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 492
Target Start/End: Complemental strand, 35636003 - 35635963
Alignment:
| Q |
453 |
tatatgtaaggatcgggattcgaac-ccaaacactccactt |
492 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
35636003 |
tatatgtagggatcgggattcgaactccaaacactccactt |
35635963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University