View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4610-Insertion-6 (Length: 488)
Name: NF4610-Insertion-6
Description: NF4610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4610-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 85 - 487
Target Start/End: Original strand, 5679284 - 5679685
Alignment:
| Q |
85 |
ttagattattacacttcagagtcgttgaatctaaatgcaaacgatgcagtagaattgtgcaagttgcactcagattcaacaaccatttaactactagaat |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5679284 |
ttagattattacacttcagagtcgttgaatctaaatgcaagcgatgcagttgaattgtgcaagttgcactcagattcaacgaccatttaactactagaat |
5679383 |
T |
|
| Q |
185 |
tgcggaaagatttcaaacactacttgaaaattaacattttttcataccgattagtgaggaatttcattaactttgtccctaccactatttcaacatctta |
284 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5679384 |
tgcggaaagattacaaacactactagaaaattaacattttttcataccgattagtgaggaatttcattaactttgtccctaccactatttcaacatctta |
5679483 |
T |
|
| Q |
285 |
tatagcacaactcaacatagcattgttgcaaaccatttaactcttctttacataggccagtttcagtgtgtgagactccacataggaggcttaaggaaac |
384 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5679484 |
tatagcacaactcaacatagca-tgttgcaaaccatttaactcttctttacataggccagtttcagtgtgtgagactccacataggaggcttaaggaaac |
5679582 |
T |
|
| Q |
385 |
acatactcctagcatctatgtaaatttccaacatatagaagaggaatctttatatttaggaaaatttggactagttgtgtagcccaccaataaccaattt |
484 |
Q |
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| T |
5679583 |
acatactcctagcatccatgtaaatttccaacatatagaagaggaatctttatatttaggaaaatttggactagttgtgtagcccaccaataaccaattt |
5679682 |
T |
|
| Q |
485 |
gca |
487 |
Q |
| |
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||| |
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| T |
5679683 |
gca |
5679685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 85 - 487
Target Start/End: Original strand, 5704336 - 5704737
Alignment:
| Q |
85 |
ttagattattacacttcagagtcgttgaatctaaatgcaaacgatgcagtagaattgtgcaagttgcactcagattcaacaaccatttaactactagaat |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5704336 |
ttagattattacacttcagagtcgttgaatctaaatgcaagcgatgcagttgaattgtgcaagttgcactcagattcaacgaccatttaactactagaat |
5704435 |
T |
|
| Q |
185 |
tgcggaaagatttcaaacactacttgaaaattaacattttttcataccgattagtgaggaatttcattaactttgtccctaccactatttcaacatctta |
284 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5704436 |
tgcggaaagattacaaacactactagaaaattaacattttttcataccgattagtgaggaatttcattaactttgtccctaccactatttcaacatctta |
5704535 |
T |
|
| Q |
285 |
tatagcacaactcaacatagcattgttgcaaaccatttaactcttctttacataggccagtttcagtgtgtgagactccacataggaggcttaaggaaac |
384 |
Q |
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| T |
5704536 |
tatagcacaactcaacatagca-tgttgcaaaccatttaactcttctttacataggccagtttcagtgtgtgagactccacataggaggcttaaggaaac |
5704634 |
T |
|
| Q |
385 |
acatactcctagcatctatgtaaatttccaacatatagaagaggaatctttatatttaggaaaatttggactagttgtgtagcccaccaataaccaattt |
484 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5704635 |
acatactcctagcatccatgtaaatttccaacatatagaagaggaatctttatatttaggaaaatttggactagttgtgtagcccaccaataaccaattt |
5704734 |
T |
|
| Q |
485 |
gca |
487 |
Q |
| |
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||| |
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|
| T |
5704735 |
gca |
5704737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 5679178 - 5679258
Alignment:
| Q |
8 |
gtaagtgggaactaagagtcattattacttcaatcattcttttttggaaaatgaaagcaagagagtctctcaaactattag |
88 |
Q |
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| T |
5679178 |
gtaagtgggaactaagagtcattattacttcaatcattcttttttggaaaatgaaagcaagagggtctctcaaactattag |
5679258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 5704230 - 5704310
Alignment:
| Q |
8 |
gtaagtgggaactaagagtcattattacttcaatcattcttttttggaaaatgaaagcaagagagtctctcaaactattag |
88 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5704230 |
gtaagtgggaactaagagtcattattacttcaatcattcttttttggaaaatgaaagcaagagggtctctcaaactattag |
5704310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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