View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4610-Insertion-7 (Length: 434)

Name: NF4610-Insertion-7
Description: NF4610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4610-Insertion-7
NF4610-Insertion-7
[»] chr2 (3 HSPs)
chr2 (213-434)||(26661423-26661644)
chr2 (8-111)||(26661745-26661848)
chr2 (219-349)||(6049912-6050043)
[»] chr6 (3 HSPs)
chr6 (213-434)||(21481341-21481562)
chr6 (8-110)||(21481663-21481767)
chr6 (213-347)||(19701161-19701296)
[»] chr7 (2 HSPs)
chr7 (225-423)||(13331531-13331727)
chr7 (225-423)||(13342446-13342642)
[»] chr5 (1 HSPs)
chr5 (225-423)||(5672002-5672198)
[»] chr8 (2 HSPs)
chr8 (213-378)||(10637619-10637784)
chr8 (213-378)||(32717810-32717975)
[»] chr1 (2 HSPs)
chr1 (213-378)||(22893774-22893939)
chr1 (219-349)||(44306129-44306259)
[»] chr3 (1 HSPs)
chr3 (225-406)||(15761973-15762154)
[»] scaffold0586 (1 HSPs)
scaffold0586 (213-347)||(9594-9729)
[»] chr4 (1 HSPs)
chr4 (219-300)||(13893697-13893778)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 213 - 434
Target Start/End: Complemental strand, 26661644 - 26661423
Alignment:
Q  213 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661644 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaatt 26661545  T
Q  313 ggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcggg 412  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  26661544 ggcaagcagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcggg 26661445  T
Q  413 aatggcaagggtagaagaggta 434  Q
    ||||||||||||||||||||||    
T  26661444 aatggcaagggtagaagaggta 26661423  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 26661848 - 26661745
Alignment:
Q  8 ttgggaaaagttagaagaaggtgatttaataaaaacaagttgtctctaacctttttcttcattgattcatgattgggaaaaaacaagaattgccaaacag 107  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26661848 ttggaaaaagttagaagaaggtggtttaataaaaacaagttgtctctaaccttttttttcattgattcatgattgggaaaaaacaagaattgccaaacag 26661749  T
Q  108 tggg 111  Q
    ||||    
T  26661748 tggg 26661745  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 219 - 349
Target Start/End: Complemental strand, 6050043 - 6049912
Alignment:
Q  219 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaag 318  Q
    |||||||||||||||||||||||||||||||||||||||||   | |||||| |||| ||||||||| |||||||||||||| | |||| || | |||||    
T  6050043 tgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaag 6049944  T
Q  319 tagttgatgcaca-cacaaagatcatgggttt 349  Q
     |||||||| ||| ||||||||| ||||||||    
T  6049943 cagttgatgaacaccacaaagatgatgggttt 6049912  T

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Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 213 - 434
Target Start/End: Complemental strand, 21481562 - 21481341
Alignment:
Q  213 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaatt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  21481562 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgttaccttgaatagaagagtgaaatcaaaaacccaatt 21481463  T
Q  313 ggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcggg 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||    
T  21481462 ggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcagg 21481363  T
Q  413 aatggcaagggtagaagaggta 434  Q
    ||||||||||||||||||||||    
T  21481362 aatggcaagggtagaagaggta 21481341  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 21481767 - 21481663
Alignment:
Q  8 ttgggaaaagttagaagaaggtgatttaataaaaacaagttgtctctaacctttttctt-cattgattcatgattggg-aaaaaacaagaattgccaaac 105  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||| |||||| || |||||||||||||||||| |||||||||||||||||||||    
T  21481767 ttgggaaaagttagaagaaggtgggttaataaaaacaagttgtctctaaacttttttttgcattgattcatgattgggaaaaaaacaagaattgccaaac 21481668  T
Q  106 agtgg 110  Q
    |||||    
T  21481667 agtgg 21481663  T

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Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 19701296 - 19701161
Alignment:
Q  213 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaatt 312  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||| ||||||||| ||||| ||| |    
T  19701296 gagaaatgatataaatcaacaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaaat 19701197  T
Q  313 ggcaagtagttgatgcacac-acaaagatcatgggt 347  Q
     ||||| |||||||| |||| |||||||||||||||    
T  19701196 agcaagcagttgatgaacactacaaagatcatgggt 19701161  T

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Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 225 - 423
Target Start/End: Original strand, 13331531 - 13331727
Alignment:
Q  225 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttg 324  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||||| |||||||||||||||||||| ||||  ||||| |||||    
T  13331531 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 13331630  T
Q  325 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcgggaatggcaaggg 423  Q
    ||| ||||||||||||||||||||   ||||||| |||| | |||||||||||||||||||| ||||||  ||| ||||||||||||||||||||||||    
T  13331631 atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatc--agagaaagaatagcgggaatggcaaggg 13331727  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 225 - 423
Target Start/End: Original strand, 13342446 - 13342642
Alignment:
Q  225 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttg 324  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||||| |||||||||||||||||||| ||||  ||||| |||||    
T  13342446 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 13342545  T
Q  325 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcgggaatggcaaggg 423  Q
    ||| ||||||||||||||||||||   ||||||| |||| | |||||||||||||||||||| ||||||  ||| ||||||||||||||||| ||||||    
T  13342546 atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatc--agagaaagaatagcgggaatgacaaggg 13342642  T

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Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 225 - 423
Target Start/End: Original strand, 5672002 - 5672198
Alignment:
Q  225 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttg 324  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||||| |||||||||||||||||||| ||||  ||||| |||||    
T  5672002 caatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttg 5672101  T
Q  325 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcgggaatggcaaggg 423  Q
    ||| ||||||||||||||||||||   ||||||| |||| | |||||||||||||||||||| ||||||  ||| ||||||||||||||||| ||||||    
T  5672102 atgaacacacaaagatcatgggttatcttttatatagaaaaacatgggtgaaaatgtttagcgggaatc--agagaaagaatagcgggaatgacaaggg 5672198  T

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Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 213 - 378
Target Start/End: Complemental strand, 10637784 - 10637619
Alignment:
Q  213 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaatt 312  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||| |||      
T  10637784 gagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgataccttgaagagaagagtgaaatccaaaactcaaac 10637685  T
Q  313 ggcaagtagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa 378  Q
     ||||| |||||||| |||| |||||||| |||||||||||||| || |||| ||||||||||||||    
T  10637684 agcaagcagttgatgaacactacaaagataatgggtttcttttt-tatagaagatcatgggtgaaaa 10637619  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 213 - 378
Target Start/End: Original strand, 32717810 - 32717975
Alignment:
Q  213 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaatt 312  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||      
T  32717810 gagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaac 32717909  T
Q  313 ggcaagtagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa 378  Q
     ||||| |||||||| |||| |||||||| |||||||||||||| || |||| ||||||||||||||    
T  32717910 agcaagcagttgatgaacactacaaagataatgggtttcttttt-tatagaagatcatgggtgaaaa 32717975  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 213 - 378
Target Start/End: Complemental strand, 22893939 - 22893774
Alignment:
Q  213 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaatt 312  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||      
T  22893939 gagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaactcaaac 22893840  T
Q  313 ggcaagtagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa 378  Q
     ||||| |||||||| |||| |||||||||||||||||| |||| || |||| ||||||||||||||    
T  22893839 agcaagcagttgatgaacactacaaagatcatgggtttcctttt-tatagaagatcatgggtgaaaa 22893774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 349
Target Start/End: Complemental strand, 44306259 - 44306129
Alignment:
Q  219 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaag 318  Q
    |||||||||| ||||||||||||||||||||||||||||||   | | |||| |||| ||||||||| |||||||||||||| | |||| || | |||||    
T  44306259 tgatatcaatgaccaaatctatgttgagtaatggaagaattgaaaag-aatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaag 44306161  T
Q  319 tagttgatgcaca-cacaaagatcatgggttt 349  Q
     |||||||| ||| ||||||||| ||||||||    
T  44306160 cagttgatgaacaccacaaagatgatgggttt 44306129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 225 - 406
Target Start/End: Original strand, 15761973 - 15762154
Alignment:
Q  225 caatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttg 324  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||||||| ||| ||||| |||| ||||||||||||| || |||| |||| ||||||    
T  15761973 caatcaccaaatctatgttgagtaatagaagaattgagatgaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaatagttg 15762072  T
Q  325 atgcacacacaaagatcatgggtttctttttatacagaatatcatgggtgaaaatgtttagctggaatcatagaaaaagaat 406  Q
    ||| ||| |||||||||||  | |  |||||||| |||| | |||| ||||||||||||||  ||||||| |||||||||||    
T  15762073 atgaacatacaaagatcatatgatgttttttatatagaagaacatgagtgaaaatgtttagtgggaatcagagaaaaagaat 15762154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 9729 - 9594
Alignment:
Q  213 gagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaatt 312  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| |||      
T  9729 gagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaac 9630  T
Q  313 ggcaagtagttgatgcacac-acaaagatcatgggt 347  Q
      |||| |||||||| |||| |||||||||||||||    
T  9629 aacaagcagttgatgaacactacaaagatcatgggt 9594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 13893697 - 13893778
Alignment:
Q  219 tgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatc 300  Q
    |||||||||||||||||||||||||||||||||||||||||   | |||||| |||| ||||||||| ||||||||||||||    
T  13893697 tgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatc 13893778  T

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