View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4610-Insertion-8 (Length: 380)

Name: NF4610-Insertion-8
Description: NF4610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4610-Insertion-8
NF4610-Insertion-8
[»] chr8 (1 HSPs)
chr8 (8-380)||(36874984-36875371)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 380
Target Start/End: Original strand, 36874984 - 36875371
Alignment:
Q  8 ggctgatcatggtgtaaagaattaatcgttgggagttgaaattccaacggaggcgaaagatggtaatttattgaaaataccgtggctnnnnnnnnccttt 107  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||         ||||    
T  36874984 ggctggtcatggtgtaaagaattaattgttgggagttgaaattccaacggaggcgaaagatggtaattttttgaaaataccgtggctaaaaaaaatcttt 36875083  T
Q  108 ataggtctcactgaagatgcgacnnnnnnntacaacatactagagcgcacatc-----------------tggagatacagtacattgtagttggttgac 190  Q
    ||||||||||||||||||| |||       |||||||||||||||||||||||                 ||||||||||||||||||||||||||||||    
T  36875084 ataggtctcactgaagatgggacaaaaaaatacaacatactagagcgcacatcctatttccaaatacatctggagatacagtacattgtagttggttgac 36875183  T
Q  191 tctgttgtctgattttaaccaaacaaggcaatatagttggggatgagcagttttggctatcctatatcgaggcatgtgcgaagcatcacatcacaagctg 290  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  36875184 tctgttgtctgattttaaccaaacaaggcaatatagttggggatcagcagttttggctaccctata--gaggcatgtgcgaagcatcacatcacaagctg 36875281  T
Q  291 ggtatgcaactctgtcctgatgtacttttcttctacaagtttggccatattctagatccccaaactcacaaagaattcacatttccattc 380  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36875282 ggtatgcaactctgtcctgatgtacttttcttctacaagtttgggcatattctagatccccaaactcacaaagaattcacatttccattc 36875371  T

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