View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4610_high_3 (Length: 410)
Name: NF4610_high_3
Description: NF4610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4610_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 34227568 - 34227320
Alignment:
| Q |
1 |
aacaaaagtgttaagtacttaaaatagaatgatgaatcagtgacaagagagaataaataacttcacactatgttccaaatgnnnnnnntttggccaatta |
100 |
Q |
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| T |
34227568 |
aacaaaagtgttaagtacttaaaatagaatgatgaattggtgacaagagagaataaataacttcacactatattccaaatgaaaattttttggg-aatta |
34227470 |
T |
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| Q |
101 |
agtgatgaagatgtgtgatgagcatagaagcttgacagaagcagataccttataccaacaactttcttgata----tcatcttcaagtgcacagttcatg |
196 |
Q |
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| T |
34227469 |
agtgatgcagatgtgtgataagcatagaagcttgacagaagcagataccttataccaacaactttcttgatatcattcatcttcaagtgcacagttcatg |
34227370 |
T |
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| Q |
197 |
tacttaaagaagatattttgctcgctaacattgaaccagtggtcaagcaa |
246 |
Q |
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| T |
34227369 |
tacttaaagaagatattcggctcactaacattgaaccagtagtcaagcaa |
34227320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 394
Target Start/End: Complemental strand, 34227292 - 34227154
Alignment:
| Q |
247 |
aaactagtgtcattgtctgcatagctgatgtgaaaaata-----ctaatccggataccagaaactaattacgtcgcagaatttcagatttggcccattga |
341 |
Q |
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| T |
34227292 |
aaactagtgtcgttgtctgcatagttgatgtgaaaaaaaaaaaactaatccggataccagaaactaattatgtctcagaatttc--------------ga |
34227207 |
T |
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| Q |
342 |
atctccttctctggctttaatttttctattctgcaaaatcatcacaatcatac |
394 |
Q |
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| T |
34227206 |
atctccttctctggctttaatattttcatgctgcaaaattatcacaatcatac |
34227154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 312 - 394
Target Start/End: Complemental strand, 48449798 - 48449716
Alignment:
| Q |
312 |
cgtcgcagaatttcagatttggcccattgaatctccttctctggctttaatttttctattctgcaaaatcatcacaatcatac |
394 |
Q |
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| T |
48449798 |
cgtcgcagaatttcggacttggcccgttgaatctccttctctggctttaatttttccatactgaaaaattttcacaatcatac |
48449716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 2755394 - 2755471
Alignment:
| Q |
124 |
atagaagcttgacagaagcagataccttataccaacaactttcttgatatcatcttcaagtgcacagttcatgtactt |
201 |
Q |
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| T |
2755394 |
atagaaacttgatagaagcgcatacctaataccgacaactttcttgaaatcatcttcaagcgcacggttcatgtactt |
2755471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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