View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4610_high_4 (Length: 374)
Name: NF4610_high_4
Description: NF4610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4610_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 266
Target Start/End: Original strand, 24137508 - 24137773
Alignment:
| Q |
4 |
cgtagccaatgagcattaagttcaaggaaaacaaacaagttcttgtaaggcatggcattgaagacacgaagagccaagtcgcagtggccattgcgcatga |
103 |
Q |
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| T |
24137508 |
cgtagccaatgagcattaagttcaaggaaaacaaacaagttcttgtaaggcatggcattgaagacacgaagagccaagtcgcagtggccattgcgcatg- |
24137606 |
T |
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| Q |
104 |
tgtgaataaaaatggaattggtacatttgacaatatattggtctcatgctttctgaacttgaaaaactgaagttatttaaatttctccctctcagattat |
203 |
Q |
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| T |
24137607 |
--tgaatagaaatggaattggtacatttgacaatatatgggtctcatgctttctgaacttaaaaaactgaagttatttaaatttctccctctcagattat |
24137704 |
T |
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| Q |
204 |
agttcacgcacactgtttgaagg------aggtgatgacaattttggttaaaatgaagcatgggtaagg |
266 |
Q |
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| T |
24137705 |
agttcacgcgcactgtttgaaggaggtgtaggtgatgacaattttggttaaaatgaagcacggataagg |
24137773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 45148389 - 45148175
Alignment:
| Q |
6 |
tagccaatgagcattaagttcaaggaaaacaaacaagttcttgtaaggcatggcattgaagacacgaagagccaagtcgcagtggccattgcgcatgatg |
105 |
Q |
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| T |
45148389 |
tagccagtgagcattaagttccaggaaaacaa----gttcttgtaaggcatggagtcgaagacacgaagagctaaatggcagtggccattgcgcatg--- |
45148297 |
T |
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| Q |
106 |
tgaataaaaatggaattggtacatttgacaatatattggtctcatgctttctgaacttgaaaaactgaagttatttaaatttctccctctcagattatag |
205 |
Q |
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| T |
45148296 |
tgagtggaaatggaattggtacatttcacaatgtatgtgtctcttgctttttgaactggaaaa-cagaagttatgtaaatgtttccctctcagattatag |
45148198 |
T |
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| Q |
206 |
ttcacgcacactgtttgaaggag |
228 |
Q |
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| T |
45148197 |
ttcgcgcgcattgtttgaaggag |
45148175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 44860344 - 44860384
Alignment:
| Q |
317 |
tcgcataatcaagtgtatttatatgtgtcggtgtcgtgttg |
357 |
Q |
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| T |
44860344 |
tcgcataattcagtgtaattatatgtgtcggtgtcgtgttg |
44860384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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