View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4610_high_5 (Length: 347)
Name: NF4610_high_5
Description: NF4610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4610_high_5 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 257 - 347
Target Start/End: Complemental strand, 11826561 - 11826471
Alignment:
| Q |
257 |
tgttaatatatgcttacattaaaacttcagtatatttcctaaaaataaaaacatcaaagaaatgcaatgtatttatttatatacagataat |
347 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11826561 |
tgttaatatatgcttacattaaagcttcagtatattttctaaaaataaaaacatcaaagaaatgcaatgtatttatttatatacagataat |
11826471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 11826633 - 11826584
Alignment:
| Q |
124 |
atacaatggtgatgttggcttgagatcttgaagtgtcatcactttgaagt |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11826633 |
atacaatggtgatgttggcttgagatcttgaagtgtcctcactttgaagt |
11826584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University