View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4610_low_1 (Length: 645)
Name: NF4610_low_1
Description: NF4610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4610_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 538; Significance: 0; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 19 - 636
Target Start/End: Complemental strand, 7005786 - 7005170
Alignment:
| Q |
19 |
cagttcgatccaatatttaaaacattgataagacgttttaatcttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagta |
118 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7005786 |
cagttcaatccaatttttaaaacattgataagacgttttaatcttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagta |
7005687 |
T |
|
| Q |
119 |
gtttagatcccttatccatgcttgagtagagatgaaaggaacaactgcatcatgatctccactgccaacaacacatcaaaaagtctcattgcttcaaaac |
218 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7005686 |
gtttagattccttatccaagcttgagtagagatgaaaggaacaactgcatcttgatctccactgccaacaacacatcaaaaagtctcattgcttcaaaac |
7005587 |
T |
|
| Q |
219 |
tgaaattaagagtaatttatacaaaccactcgactaacaaaggtgtctttcaactaagggtaaaaccgtgagcgcttacacaagacccaaagtgaaaaat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7005586 |
tgaaattaagagtaatttatacaaaccactcgactaacaaaggtgtctttcaactaagggtgaaaccgtgagcgcttacacaagacccaaagtgaaaaat |
7005487 |
T |
|
| Q |
319 |
acctacggaaaatggtgcaatagacttgagtttcaaccaccttctaaagcaaaattctcactttagacgaacttaatccaagaaaaagactacatagata |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7005486 |
acctacggaaaatggtgcaatagacttgagtttcaaccaccttctaaagcaaaattctcactttagacgaacttaatccaagaaaaaga-tacatagata |
7005388 |
T |
|
| Q |
419 |
tggtgacaacacgagtctnnnnnnnnnnnncgctacattaaaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcat |
518 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7005387 |
tggtgacaacacgagtctaaaaagaaaaaacgctacattaaaagagaaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcat |
7005288 |
T |
|
| Q |
519 |
gaaactcaaagctaccaaatatatcatactcaaaattattcatgtaacaacgttcccatttccctatggttccctgcagggatcaaaattatgtacatta |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7005287 |
gaaactcaaagctaccaaatatatcatactcaaaatcattcatgtaacaacgttcccatttccctatggttccctgcagggatcaaaattatgtacatta |
7005188 |
T |
|
| Q |
619 |
atatgatattgatgatgt |
636 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
7005187 |
atatgatattgataatgt |
7005170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 61 - 631
Target Start/End: Complemental strand, 7015536 - 7014967
Alignment:
| Q |
61 |
cttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaac |
160 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7015536 |
cttaccctcctacttggccatttacaaaccatggcctccaatcatctacaatggagtagtttagattccttatccatgcttgagtagagatgaaaggaac |
7015437 |
T |
|
| Q |
161 |
aactgcatcatgatctccactgccaacaacacatcaaaaagtctcattgcttcaaaactgaaattaagagtaatttatacaaaccactcgactaacaaag |
260 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7015436 |
aactgcatcgtgatctccactggcaacaacacatcaaaaagtctcattgcttcaaaatggaaattaagagtaatttatacaaaccactcaactaacaaag |
7015337 |
T |
|
| Q |
261 |
gtgtctttcaactaagggtaaaaccgtgagcgcttacacaagacccaaagtgaaaaatacctacggaaaatggtgcaatagacttgagtttcaaccacct |
360 |
Q |
| |
|
| ||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||||| | ||| | |||||||| ||| |||||||| ||||||| |
|
|
| T |
7015336 |
gcgtctttcaactaagggtgaagccgtgagggcttacacaagacccagagtgaaaaatacct-ccgaatacggtgcaatggacatgagtttcgaccacct |
7015238 |
T |
|
| Q |
361 |
tctaaagcaaaattctcactttagacgaacttaatccaagaaaaagactacatagatatggtgacaacacgagtctnnnnnnnnnnnncgctacattaaa |
460 |
Q |
| |
|
||||||||||||| |||||||| || || ||||||||||||||||||||||| | |||||||||||||||||| || |||||||||||| |
|
|
| T |
7015237 |
tctaaagcaaaatgctcacttttgatgagcttaatccaagaaaaagactacaaacatatggtgacaacacgagcctaaaaagaaaaaacgctacattaaa |
7015138 |
T |
|
| Q |
461 |
agataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactcaaaattattca |
560 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
7015137 |
agagaaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaacgctaccaaatatatcatactcaaaatcattca |
7015038 |
T |
|
| Q |
561 |
tgtaacaacgttcccatttccctatggttccctgcagggatcaaaattatgtacattaatatgatattgat |
631 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
7015037 |
tgtaacaacgttcccatttccctatggttccctgcagtactcaaagctatgtacattaatatgatattgat |
7014967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 327 - 631
Target Start/End: Complemental strand, 6995857 - 6995553
Alignment:
| Q |
327 |
aaaatggtgcaatagacttgagtttcaaccaccttctaaagcaaaattctcactttagacgaacttaatccaagaaaaagactacatagatatggtgaca |
426 |
Q |
| |
|
|||| ||||||||||||||||||| || ||||||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6995857 |
aaaacggtgcaatagacttgagttccagccaccttctaaagcaaaatgctcactttagatgagcttaatccaagaaaaacactacatagatatggtgaca |
6995758 |
T |
|
| Q |
427 |
acacgagtctnnnnnnnnnnnncgctacattaaaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactca |
526 |
Q |
| |
|
|||||||||| | ||||||||||| | ||||| |||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6995757 |
acacgagtctaaaaagaaaaaactctacattaaaatagaaaatattcacctgtaaatcaaagaccggtatccttttttgcttagatttacatgaaactca |
6995658 |
T |
|
| Q |
527 |
aagctaccaaatatatcatactcaaaattattcatgtaacaacgttcccatttccctatggttccctgcagggatcaaaattatgtacattaatatgata |
626 |
Q |
| |
|
|||||||||| || |||| |||||||| ||| ||||||||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||| |
|
|
| T |
6995657 |
aagctaccaaggatctcattctcaaaatcattagagtaacaacgttcccatttccctatggttccctgcaatgctcaaagctatgtacgttaatatgata |
6995558 |
T |
|
| Q |
627 |
ttgat |
631 |
Q |
| |
|
||||| |
|
|
| T |
6995557 |
ttgat |
6995553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 61 - 197
Target Start/End: Complemental strand, 6996622 - 6996486
Alignment:
| Q |
61 |
cttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaac |
160 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
6996622 |
cttaccctcccacttgaccgtttacaaaccatggcctccaatcatctacaatggagtagtttagattccttatccaagcttgagtagacatgaaaggaac |
6996523 |
T |
|
| Q |
161 |
aactgcatcatgatctccactgccaacaacacatcaa |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6996522 |
aactgcatcatgatctccactgccaacaacacatcaa |
6996486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 7058065 - 7057889
Alignment:
| Q |
21 |
gttcgatccaatatttaaaacattgataagacgttttaatcttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagtagt |
120 |
Q |
| |
|
|||| ||| ||| ||||||||||||||| || | || | ||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7058065 |
gttcaatctaatttttaaaacattgatatgaaggttgatgcttaccctcccacttggccatttacaaaccatgacctccaatcatctacaatggagtagt |
7057966 |
T |
|
| Q |
121 |
ttagatcccttatccatgcttgagtagagatgaaaggaacaactgcatcatgatctccactgccaacaacacatcaa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || |||||||||| |
|
|
| T |
7057965 |
ttagatcccttatccatgcttgagtagagatgaaaggaacaactacatcatgatccccactgcaaaaaacacatcaa |
7057889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 37 - 197
Target Start/End: Complemental strand, 7042032 - 7041872
Alignment:
| Q |
37 |
aaaacattgataagacgttttaatcttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagtagtttagatcccttatcca |
136 |
Q |
| |
|
|||||||||||| || |||| | ||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7042032 |
aaaacattgatatgaagtttcatacttaccctcccacttggccatttacaaaccatggcctccagtcatctacaatggagtagtttagatcccttatcca |
7041933 |
T |
|
| Q |
137 |
tgcttgagtagagatgaaaggaacaactgcatcatgatctccactgccaacaacacatcaa |
197 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||| |
|
|
| T |
7041932 |
agcttgagtagacatgaaaggaacaactgcatcatgatccccactgcaaaaaacacatcaa |
7041872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 61 - 186
Target Start/End: Complemental strand, 7022282 - 7022157
Alignment:
| Q |
61 |
cttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaac |
160 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7022282 |
cttaccctcccacttgaccatttacaaaccatggcctccaatcatctacagtggagtaatttagatcccttatccatgcttgagtagacatgaaaggaac |
7022183 |
T |
|
| Q |
161 |
aactgcatcatgatctccactgccaa |
186 |
Q |
| |
|
|| ||||||| || | |||||||||| |
|
|
| T |
7022182 |
aattgcatcaagaaccccactgccaa |
7022157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 451 - 631
Target Start/End: Complemental strand, 7041219 - 7041038
Alignment:
| Q |
451 |
ctacatta-aaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactc |
549 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| ||| || ||| ||| |
|
|
| T |
7041219 |
ctacattataaagagaaaatattcacctgtatatcaaagagcgatatccttttttgcttagatttgcatgaaactcaacgctactaaagatctcacgctc |
7041120 |
T |
|
| Q |
550 |
aaaattattcatgtaacaacgttcccatttccctatggttccctgcagggatcaaaattatgtacattaatatgatattgat |
631 |
Q |
| |
|
||||| | | ||||||| |||||||||||||||||| ||||||| | || ||||| ||||||||| |||||||||||||| |
|
|
| T |
7041119 |
aaaatcagtagtgtaacatcgttcccatttccctatgcttccctgtatggctcaaagatatgtacatcaatatgatattgat |
7041038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 465 - 631
Target Start/End: Complemental strand, 7028756 - 7028591
Alignment:
| Q |
465 |
aaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactcaaaattattcatgta |
564 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||| || ||| |||||||| | | |||| |
|
|
| T |
7028756 |
aaaatcttcacctgtatatcaaagagcggtatccttttttgcttagattcacatgaaactcaacgctactaaagatctcacgctcaaaatcagtagtgta |
7028657 |
T |
|
| Q |
565 |
acaacgttcccatttccctatggttccctgcagggatcaaaattatgtacattaatatgatattgat |
631 |
Q |
| |
|
||| |||||||||||||||||| ||||||| |||| || || |||||||||||||||||||||||| |
|
|
| T |
7028656 |
acatcgttcccatttccctatgcttccctgtagggctc-aatctatgtacattaatatgatattgat |
7028591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 61 - 197
Target Start/End: Complemental strand, 7029016 - 7028880
Alignment:
| Q |
61 |
cttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaac |
160 |
Q |
| |
|
|||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7029016 |
cttaccctgccacttgaccatttacaaaccatgacctccaatcatctacaatggagtagtttagatcccttatccatgcttgagtagactggaaaggaac |
7028917 |
T |
|
| Q |
161 |
aactgcatcatgatctccactgccaacaacacatcaa |
197 |
Q |
| |
|
|||| |||| |||| ||||||| || |||||||||| |
|
|
| T |
7028916 |
aactaaatcaagatccccactgcaaaaaacacatcaa |
7028880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 451 - 617
Target Start/End: Complemental strand, 7057177 - 7057010
Alignment:
| Q |
451 |
ctacatta-aaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactc |
549 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| || ||| ||| |
|
|
| T |
7057177 |
ctacattagaaagagaaaatcttcacctgtatatcaaagagcggtatccttttttgcttagatttgcatgaaactcaacgctactaaaaatctcacgctc |
7057078 |
T |
|
| Q |
550 |
aaaattattcatgtaacaacgttcccatttccctatggttccctgcagggatcaaaattatgtacatt |
617 |
Q |
| |
|
||||| | | |||||| ||||||||||| |||||||| ||||||| |||| ||| |||||||||| |
|
|
| T |
7057077 |
aaaatcagtacggtaacatcgttcccattttcctatggtaccctgcatggattaaagctatgtacatt |
7057010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 7049150 - 7048972
Alignment:
| Q |
19 |
cagttcgatccaatatttaaaacattgataagacgttttaatcttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagta |
118 |
Q |
| |
|
|||||| ||| ||| ||||||||||||||| || | || | |||||||| |||||||| | |||||| |||||| ||||||||| |||| ||||||||| |
|
|
| T |
7049150 |
cagttcaatctaatttttaaaacattgatatgaaggttgatgcttaccctgccacttggccatttacataccatgacctccaatcctctataatggagta |
7049051 |
T |
|
| Q |
119 |
gtttagatcccttatccatgcttgagtagagatgaaaggaacaactgcatcatgatctccactgccaacaacacatcaa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| | |||| |||| ||||||| || |||||||||| |
|
|
| T |
7049050 |
gtttagatcccttatccatgcttgagtagaccggaaaggaacaattaaatcaagatccccactgcaaaaaacacatcaa |
7048972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 451 - 605
Target Start/End: Complemental strand, 7048338 - 7048183
Alignment:
| Q |
451 |
ctacatta-aaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactc |
549 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| ||| || ||| || |
|
|
| T |
7048338 |
ctacattagaaagagaaaatcttcacctgtatatcaaagagcggtatccttttttgcttagatttgcatgaaactcaacggtactaaagatctcacgctt |
7048239 |
T |
|
| Q |
550 |
aaaattattcatgtaacaacgttcccatttccctatggttccctgcagggatcaaa |
605 |
Q |
| |
|
||||| | | ||||||| ||||||||| | |||||||| ||||||| |||||||| |
|
|
| T |
7048238 |
aaaatcagtagtgtaacatcgttcccatgttcctatggtaccctgcatggatcaaa |
7048183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 459 - 593
Target Start/End: Complemental strand, 7022025 - 7021891
Alignment:
| Q |
459 |
aaagataaaatcttcacctgtatatcaaagaacggtatccttttttgcttagatttgcatgaaactcaaagctaccaaatatatcatactcaaaattatt |
558 |
Q |
| |
|
||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||| || || | |||||||| | | |
|
|
| T |
7022025 |
aaagagaaaaacttcacctgtatatcaaagagcggtatccttttttgcttagatttgcatgaaactcaacgctgctaaagatctccttctcaaaatcagt |
7021926 |
T |
|
| Q |
559 |
catgtaacaacgttcccatttccctatggttccct |
593 |
Q |
| |
|
|||||||||| | |||||| |||| |||||||| |
|
|
| T |
7021925 |
attgtaacaacgataccattttcctacggttccct |
7021891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 299
Target Start/End: Complemental strand, 6995966 - 6995868
Alignment:
| Q |
205 |
cattgcttcaaaactgaaattaagagtaatttatacaaac----cactcgactaacaaaggtgtctttcaactaagggtaaaaccgtgagcgcttacac |
299 |
Q |
| |
|
||||||||| ||| | |||||||||||||||||||||||| ||||| |||||| |||| |||||||||||| || |||||| || |||||||| |
|
|
| T |
6995966 |
cattgcttcgaaattaaaattaagagtaatttatacaaaccacgcactcaactaaccaaggcatctttcaactaatggcgaaaccgcaagggcttacac |
6995868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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