View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4610_low_12 (Length: 240)

Name: NF4610_low_12
Description: NF4610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4610_low_12
NF4610_low_12
[»] chr1 (3 HSPs)
chr1 (147-240)||(11825978-11826075)
chr1 (20-90)||(11825595-11825665)
chr1 (20-78)||(10214680-10214738)
[»] chr4 (1 HSPs)
chr4 (31-73)||(14191445-14191487)
[»] chr3 (1 HSPs)
chr3 (28-84)||(5940051-5940107)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 11825978 - 11826075
Alignment:
Q  147 aataagaagcaacaagtgatta----ccaaccaagaaggtatatgaaacttcaatttcatcttgtgaacaacaattatgcacttgaaacctttatcac 240  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11825978 aataagaagcaacaagtgattaattaccaaccaagaaggtatatgaaacttcaatttcctcttgtgaacaacaattatgcacttgaaacctttatcac 11826075  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 11825595 - 11825665
Alignment:
Q  20 cgaatcacacaaaacttatattcgaattgaagggaattaagtgtagaatccaaatatcctataatcactta 90  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  11825595 cgaatcacacaaaacttatattcgaattgaagggaattaagcgtagaatccaaatatccaataatcactta 11825665  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 10214738 - 10214680
Alignment:
Q  20 cgaatcacacaaaacttatattcgaattgaagggaattaagtgtagaatccaaatatcc 78  Q
    ||||||| || ||| |||||| ||||||||||||||||||  |||||||| ||||||||    
T  10214738 cgaatcatacgaaatttatatccgaattgaagggaattaaacgtagaatctaaatatcc 10214680  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 14191445 - 14191487
Alignment:
Q  31 aaacttatattcgaattgaagggaattaagtgtagaatccaaa 73  Q
    |||||||||| |||||||||||||||| |||||| ||||||||    
T  14191445 aaacttatatccgaattgaagggaattgagtgtacaatccaaa 14191487  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 5940051 - 5940107
Alignment:
Q  28 acaaaacttatattcgaattgaagggaattaagtgtagaatccaaatatcctataat 84  Q
    |||||| |||||| | || |||||||||||||||||||| |||||| |||| |||||    
T  5940051 acaaaatttatatccaaactgaagggaattaagtgtagagtccaaaaatccaataat 5940107  T

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