View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4610_low_3 (Length: 597)

Name: NF4610_low_3
Description: NF4610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4610_low_3
NF4610_low_3
[»] chr7 (18 HSPs)
chr7 (16-498)||(36463846-36464324)
chr7 (20-132)||(3935031-3935139)
chr7 (20-131)||(3932792-3932899)
chr7 (45-133)||(8731174-8731262)
chr7 (21-132)||(8414489-8414596)
chr7 (45-131)||(18395411-18395497)
chr7 (45-131)||(42678571-42678657)
chr7 (499-579)||(36463101-36463181)
chr7 (45-131)||(16496953-16497039)
chr7 (45-131)||(19789185-19789272)
chr7 (45-131)||(16535135-16535221)
chr7 (45-131)||(16630441-16630527)
chr7 (45-129)||(19786879-19786964)
chr7 (45-131)||(8733495-8733582)
chr7 (45-134)||(21769066-21769155)
chr7 (45-131)||(3052303-3052387)
chr7 (77-131)||(42680808-42680862)
chr7 (61-129)||(19093846-19093912)
[»] chr3 (2 HSPs)
chr3 (45-132)||(4533231-4533318)
chr3 (45-131)||(4530934-4531020)
[»] chr5 (9 HSPs)
chr5 (45-131)||(11852175-11852261)
chr5 (45-132)||(11849916-11850003)
chr5 (45-131)||(23164254-23164340)
chr5 (45-132)||(22601000-22601088)
chr5 (45-131)||(37215551-37215638)
chr5 (45-131)||(1779222-1779303)
chr5 (53-131)||(21743719-21743797)
chr5 (60-131)||(37207998-37208070)
chr5 (70-131)||(15469197-15469258)
[»] chr4 (9 HSPs)
chr4 (45-131)||(13774250-13774336)
chr4 (45-131)||(45162278-45162364)
chr4 (45-132)||(42468438-42468525)
chr4 (45-131)||(42470768-42470854)
chr4 (45-131)||(50855771-50855857)
chr4 (45-128)||(13776546-13776630)
chr4 (45-131)||(19429076-19429163)
chr4 (45-129)||(45167170-45167254)
chr4 (70-131)||(8739501-8739562)
[»] chr2 (10 HSPs)
chr2 (45-131)||(42275556-42275642)
chr2 (45-131)||(42277782-42277868)
chr2 (45-131)||(5164151-5164237)
chr2 (45-125)||(8995076-8995156)
chr2 (45-131)||(31486982-31487069)
chr2 (45-133)||(31489266-31489355)
chr2 (45-125)||(15730013-15730093)
chr2 (69-131)||(39816089-39816151)
chr2 (70-132)||(23860126-23860188)
chr2 (70-123)||(34576612-34576665)
[»] chr8 (6 HSPs)
chr8 (45-133)||(24519151-24519239)
chr8 (45-131)||(4877090-4877176)
chr8 (45-131)||(4879418-4879504)
chr8 (45-131)||(36379465-36379552)
chr8 (45-131)||(21268120-21268207)
chr8 (45-132)||(36377180-36377267)
[»] chr1 (9 HSPs)
chr1 (45-132)||(10911449-10911536)
chr1 (45-131)||(29833076-29833162)
chr1 (45-131)||(29833960-29834046)
chr1 (45-131)||(10909205-10909292)
chr1 (45-131)||(8933549-8933635)
chr1 (45-131)||(13011795-13011881)
chr1 (45-131)||(734579-734663)
chr1 (52-131)||(2403835-2403915)
chr1 (52-131)||(2409957-2410037)
[»] scaffold0599 (1 HSPs)
scaffold0599 (45-131)||(1715-1801)
[»] scaffold0008 (1 HSPs)
scaffold0008 (45-131)||(88445-88531)
[»] scaffold1361 (1 HSPs)
scaffold1361 (45-131)||(53-140)
[»] scaffold0098 (1 HSPs)
scaffold0098 (53-131)||(3707-3785)
[»] scaffold0050 (2 HSPs)
scaffold0050 (70-131)||(29453-29514)
scaffold0050 (70-131)||(31768-31829)
[»] chr6 (1 HSPs)
chr6 (70-129)||(20642300-20642359)
[»] scaffold0045 (2 HSPs)
scaffold0045 (70-134)||(64082-64144)
scaffold0045 (70-134)||(71414-71476)


Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 16 - 498
Target Start/End: Complemental strand, 36464324 - 36463846
Alignment:
Q  16 tcaagatactcaagcatagtcaagcattaattgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttcc 115  Q
    ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464324 tcaagatactcaagcatagtcaagcatt----gaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttcc 36464229  T
Q  116 ttttgtccctgagccaaatgattcctcgaaaaatgctttgtgctacattaggatgatacttgnnnnnnnggaatccaaaccagacacacagaacgtgtat 215  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  36464228 ttttgtccctgagccaaacgattcctcgaaaaatgctttgtgctacattaggatgatacttgtttttttggaatccaaaccagacacacagaacgtgtat 36464129  T
Q  216 acgatgttttatgacttggattcgcatgatttacttccatacttccatagcttaataatgaattttattttggtaagtgactacgattccattggagttt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  36464128 acgatgttttatgacttggattcgcatgatttacttccatacttccatagcttaataatgaattttattttggaaggtgactacgattccattggagttt 36464029  T
Q  316 ttgattggttatcttgtgaacataaacacaacctcaaacataaggatcataggtttctttccctgtctctaaactcctttaacatagacatgatgacttc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464028 ttgattggttatcttgtgaacataaacacaacctcaaacataaggatcataggtttctttccctgtctctaaactcctttaacatagacatgatgacttc 36463929  T
Q  416 ataaacaagttgttccaagcttggaatcatgttaatagtgacttcaagttctcccacaattttacgagctcttatgtaaagtc 498  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36463928 ataaacaagtttttccaagcttggaatcatgttaatagtgacttcaagttctcccacaattttacgagctcttatgtaaagtc 36463846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 3935031 - 3935139
Alignment:
Q  20 gatactcaagcatagtcaagcattaattgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttcctttt 119  Q
    |||||||||||||| |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3935031 gatactcaagcataatcaagcatt----gaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttcctttt 3935126  T
Q  120 gtccctgagccaa 132  Q
    |||||||||||||    
T  3935127 gtccctgagccaa 3935139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 3932792 - 3932899
Alignment:
Q  20 gatactcaagcatagtcaagcattaattgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttcctttt 119  Q
    |||||||||||||| |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3932792 gatactcaagcataatcaagcatt----gaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttcctttt 3932887  T
Q  120 gtccctgagcca 131  Q
    ||||||||||||    
T  3932888 gtccctgagcca 3932899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 8731262 - 8731174
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaaa 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  8731262 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttatctacctttccttttgtccctgagccaaa 8731174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 8414596 - 8414489
Alignment:
Q  21 atactcaagcatagtcaagcattaattgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttg 120  Q
    ||||||||||||| |||||||||    ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  8414596 atactcaagcatattcaagcatt----gaatcattcaaataatataacttttctttgagaatattagagtgtttttctattttctctacctttccttttg 8414501  T
Q  121 tccctgagccaa 132  Q
    ||||||||||||    
T  8414500 tccctgagccaa 8414489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 18395411 - 18395497
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  18395411 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctaagcca 18395497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 42678657 - 42678571
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  42678657 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctttattttctctacctttccttttgtccctgagcca 42678571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 499 - 579
Target Start/End: Complemental strand, 36463181 - 36463101
Alignment:
Q  499 tgacgaatgtgagtaaagggctaaatatataatttggtgacatgattgagttatttggaaattgaaattggcatgagatcc 579  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36463181 tgacgaatgtgagtaaagggttaaatatataatttggtgacatgattgagttatttggaaattgaaattggcatgagatcc 36463101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 16497039 - 16496953
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  16497039 attgaatcatttaagtaatataacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgagcca 16496953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 19789185 - 19789272
Alignment:
Q  45 attgaatcattcaagtaatataacttttc-tttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19789185 attgaatgattcaagtaatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 19789272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 16535221 - 16535135
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  16535221 attgaatcatttaagtaatataacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccccgagcca 16535135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 16630441 - 16630527
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  16630441 attgaatcatttaagtaatataacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccccgagcca 16630527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 19786879 - 19786964
Alignment:
Q  45 attgaatcattcaagtaatataacttttc-tttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagc 129  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19786879 attgaatgattcaagtaatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagc 19786964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 8733582 - 8733495
Alignment:
Q  45 attgaatcattcaagtaatataa-cttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||||| ||||||| |||||||| |||||||||||||||||||||| ||||||| ||||||||||||||  |||||||||||||||||    
T  8733582 attgaagcattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttctcttttgtccctgagcca 8733495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 21769155 - 21769066
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaaat 134  Q
    |||||| ||||||| |||||  |  ||||||||||||||||| || ||||||| ||||||||||||||||||||  ||||||||| ||||    
T  21769155 attgaaacattcaaataataacaactttctttgagaatattaaagagtttctctattttctctacctttcctttcatccctgagcaaaat 21769066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 3052303 - 3052387
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||||| ||||||| ||||||||  |||||||||||||| ||||  ||||||  |||||||||||| |||||||||||||| |||||    
T  3052303 attgaagcattcaaataatataaactttctttgagaataataga--gtttctttattttctctaccattccttttgtccctcagcca 3052387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 42680808 - 42680862
Alignment:
Q  77 gagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||    
T  42680808 gagaatattagagtgtttctctattttctctacctttcattttgttcctcagcca 42680862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 19093912 - 19093846
Alignment:
Q  61 aatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagc 129  Q
    |||||||  |||||||||||||||||||| ||||||  ||||||||||||| |||||||| ||||||||    
T  19093912 aatataaactttctttgagaatattagagagtttct--attttctctacctctccttttgaccctgagc 19093846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 4533231 - 4533318
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4533231 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaa 4533318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 4530934 - 4531020
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4530934 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 4531020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 11852261 - 11852175
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11852261 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 11852175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 11850003 - 11849916
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 132  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11850003 attgaatcattcaaataatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaa 11849916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 23164340 - 23164254
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  23164340 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgagcca 23164254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 22601000 - 22601088
Alignment:
Q  45 attgaatcattcaagtaatataa-cttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 132  Q
    |||||| ||||||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  22601000 attgaagcattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagccaa 22601088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 37215551 - 37215638
Alignment:
Q  45 attgaatcattcaagtaatataa-cttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||||| ||||||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  37215551 attgaagcattcaaataatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 37215638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 1779303 - 1779222
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||     |||||||||||||||||||||    
T  1779303 attgaatcattcaagtaatataacttttctttgagaatattagagtgttcctctattttct-----tttccttttgtccctgagcca 1779222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 21743719 - 21743797
Alignment:
Q  53 attcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||||| ||||||||  |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  21743719 attcaaataatataaactttctttgagaatattagagagtttctctattttctctacctttccttttgtccctgggcca 21743797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 37207998 - 37208070
Alignment:
Q  60 taatataa-cttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||||||| |||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  37207998 taatataatcttttcttcgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 37208070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 15469197 - 15469258
Alignment:
Q  70 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||||||||||||||||||| ||||||| ||||| | |||||||||||||||||||||||||    
T  15469197 tttctttgagaatattagagagtttctctattttttttacctttccttttgtccctgagcca 15469258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 13774250 - 13774336
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13774250 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 13774336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 45162278 - 45162364
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45162278 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 45162364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 42468525 - 42468438
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 132  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42468525 attgaagcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaa 42468438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 42470854 - 42470768
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42470854 attgaagcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 42470768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 50855857 - 50855771
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50855857 attgaatcattcaagtaatataacttttcctcgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 50855771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 13776546 - 13776630
Alignment:
Q  45 attgaatcattcaagtaatataacttttc-tttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgag 128  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13776546 attgaatcattcaagtaatataacttttcgtttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 13776630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 19429163 - 19429076
Alignment:
Q  45 attgaatcattcaagtaatata-acttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  19429163 attgaatcattcaagtaatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgagcca 19429076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 45167170 - 45167254
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagc 129  Q
    |||||||||||||| ||||||||||||| ||| |||||||||||||||||||| ||||||  || |||||||||||||| |||||    
T  45167170 attgaatcattcaaataatataacttttttttaagaatattagagtgtttctctattttcggtaactttccttttgtccatgagc 45167254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 8739501 - 8739562
Alignment:
Q  70 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||| ||||||| ||||||| ||||||  |||||||||  |||||||||| |||||||||||    
T  8739501 tttccttgagaacattagagagtttctttattttctctttctttccttttatccctgagcca 8739562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 42275642 - 42275556
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42275642 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 42275556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 42277868 - 42277782
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42277868 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 42277782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 5164237 - 5164151
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5164237 attgaagcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 5164151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 8995156 - 8995076
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccct 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  8995156 attgaatcattcaagtaatataacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccct 8995076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 31486982 - 31487069
Alignment:
Q  45 attgaatcattcaagtaatataacttttc-tttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31486982 attgaatgattcaagtaatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 31487069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 31489266 - 31489355
Alignment:
Q  45 attgaatcattcaagtaatataacttttc-tttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaaa 133  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  31489266 attgaatgattcaagtaatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctaagccaaa 31489355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 15730013 - 15730093
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccct 125  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  15730013 attgaatcattcaagtaatataacttttatttgagaatattagagagtttctctattttctctacctttccttttgtccct 15730093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 39816151 - 39816089
Alignment:
Q  69 ttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  39816151 ttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgagcca 39816089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 23860126 - 23860188
Alignment:
Q  70 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 132  Q
    |||||||||||||||||||| ||||||| ||||||| | | ||||||||||||||||||||||    
T  23860126 tttctttgagaatattagagagtttctctattttctatgcttttccttttgtccctgagccaa 23860188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 34576665 - 34576612
Alignment:
Q  70 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtcc 123  Q
    |||||||||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  34576665 tttctttgagaatattagagagtttctctattttctctaccttaccttttgtcc 34576612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 8e-38; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 24519239 - 24519151
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaaa 133  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24519239 attgaatcattcaagtaatataacttttcttagagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaaa 24519151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 4877090 - 4877176
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4877090 attgaatgattcaagtaatataacttttccttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 4877176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 4879418 - 4879504
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4879418 attgaatgattcaagtaatataacttttccttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 4879504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 36379552 - 36379465
Alignment:
Q  45 attgaatcattcaagtaatataacttttc-tttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36379552 attgaatgattcaagtaatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 36379465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 21268207 - 21268120
Alignment:
Q  45 attgaatcattcaagtaatataacttttc-tttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  21268207 attgaatgattcaagtaatataacttttcctttgagaatattagagtgtttctctattttctctaccttttcttttgtccctgagcca 21268120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 36377267 - 36377180
Alignment:
Q  45 attgaatcattcaagtaatataacttttc-tttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 132  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  36377267 attgaatgattcaagtaatataacttttcctttgagaatattagagtgtttctctattttctctacctttcc-tttgtccttgagccaa 36377180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 10911449 - 10911536
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaa 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  10911449 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttatctacctttccttttgtccctgagccaa 10911536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 29833162 - 29833076
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  29833162 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgagcca 29833076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 29833960 - 29834046
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29833960 attgaatccttcaagtaatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 29834046  T

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Target: chr1; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 10909205 - 10909292
Alignment:
Q  45 attgaatcattcaagtaatataacttttc-tttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10909205 attgaatcattcaagtaatataacttttcgtttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 10909292  T

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Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 8933635 - 8933549
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  8933635 attgaatcattcaagtaatataacttttctttgaaaatattagagtgtttctctattttctctaccttttcttttgtccctgagcca 8933549  T

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Target: chr1; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 13011795 - 13011881
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  13011795 attgaatcattcaaataatataacttttctttgagaatattagagtgtttctctattttctctacctttccttttgttcctgagcca 13011881  T

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Target: chr1; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 734663 - 734579
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||| ||||||||||||||||||||| |||||||||||||  |||||||| |||||||||||||||||||||||||||||||||    
T  734663 attgaatgattcaagtaatataacttttccttgagaatattag--tgtttctctattttctctacctttccttttgtccctgagcca 734579  T

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Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 2403915 - 2403835
Alignment:
Q  52 cattcaagtaatataac-ttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||| ||||||||  ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  2403915 cattcaaataatataatattttctttgagaatattagagagtttctctattttctctacctttccttttgtccctgagcca 2403835  T

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Target: chr1; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 2410037 - 2409957
Alignment:
Q  52 cattcaagtaatataac-ttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||| ||||||||  |||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||    
T  2410037 cattcaaataatataatattttctttgagaatattatagagtttctctattttctctacctttccttttgtccctgagcca 2409957  T

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Target: scaffold0599 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 1715 - 1801
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1715 attgaatcattcaagtaatataacttttctttgaggatattagagtgtttctctattttctctacctttccttttgtccctgagcca 1801  T

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Target: scaffold0008 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 88445 - 88531
Alignment:
Q  45 attgaatcattcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  88445 attgaatcattcaagtaatataacttttctttgagaatattagagtctttctctattttctctacctttccttttgtccctgagcca 88531  T

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Target: scaffold1361 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 53 - 140
Alignment:
Q  45 attgaatcattcaagtaatataacttttc-tttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  53 attgaatcattcaagtaatataacttttcgtttgagaatattaaagtgtttctctattttctctacctttccttttgtccctgagcca 140  T

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Target: scaffold0098 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 3785 - 3707
Alignment:
Q  53 attcaagtaatataacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||||| ||||||||  |||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||    
T  3785 attcaaataatataaactttctttgagaatattagagagttactctattttctctacctttccttttgtccctgagcca 3707  T

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Target: scaffold0050 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 29453 - 29514
Alignment:
Q  70 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  29453 tttctttgagaacattagagagtttctctattttctctacctttccttttgtccctgagcca 29514  T

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Target: scaffold0050; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 31768 - 31829
Alignment:
Q  70 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagcca 131  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  31768 tttctttgagaacattagagagtttctctattttctctacctttccttttgtccttgagcca 31829  T

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Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 20642300 - 20642359
Alignment:
Q  70 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagc 129  Q
    ||||||||||||||||||||  |||||| |||||||||||||||| ||||||||||||||    
T  20642300 tttctttgagaatattagagaatttctctattttctctacctttcattttgtccctgagc 20642359  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 64082 - 64144
Alignment:
Q  70 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaaat 134  Q
    ||||||||||||||||  || ||||||| ||||||| |||||||| ||||||| |||| ||||||    
T  64082 tttctttgagaatatt--agggtttctctattttctttacctttcattttgtctctgatccaaat 64144  T

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Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 71414 - 71476
Alignment:
Q  70 tttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaaat 134  Q
    ||||||||||||||||  || ||||||| ||||||| |||||||| ||||||| |||| ||||||    
T  71414 tttctttgagaatatt--agggtttctctattttctttacctttcattttgtctctgatccaaat 71476  T

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