View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4610_low_7 (Length: 344)

Name: NF4610_low_7
Description: NF4610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4610_low_7
NF4610_low_7
[»] chr3 (5 HSPs)
chr3 (15-336)||(54861550-54861871)
chr3 (34-173)||(25568541-25568682)
chr3 (57-126)||(35018507-35018577)
chr3 (223-265)||(51917802-51917844)
chr3 (57-122)||(30326938-30327003)
[»] chr1 (17 HSPs)
chr1 (58-265)||(19810837-19811047)
chr1 (34-181)||(41590452-41590599)
chr1 (34-109)||(19809943-19810018)
chr1 (57-139)||(40571594-40571675)
chr1 (59-108)||(10239500-10239549)
chr1 (57-117)||(347110-347170)
chr1 (57-109)||(17557708-17557760)
chr1 (70-125)||(40566046-40566102)
chr1 (70-109)||(21641405-21641444)
chr1 (92-126)||(40188675-40188709)
chr1 (79-120)||(1306057-1306098)
chr1 (57-110)||(7525054-7525107)
chr1 (97-126)||(9632291-9632320)
chr1 (71-120)||(11584349-11584398)
chr1 (17-109)||(19810683-19810775)
chr1 (223-267)||(19811149-19811193)
chr1 (98-126)||(27829719-27829747)
[»] chr6 (2 HSPs)
chr6 (34-267)||(1206002-1206239)
chr6 (57-126)||(19385574-19385642)
[»] chr5 (4 HSPs)
chr5 (57-126)||(15844493-15844562)
chr5 (17-263)||(31973267-31973511)
chr5 (80-138)||(40261034-40261092)
chr5 (70-109)||(22198986-22199025)
[»] chr7 (8 HSPs)
chr7 (60-136)||(39079899-39079975)
chr7 (17-109)||(16015394-16015486)
chr7 (34-135)||(14596152-14596252)
chr7 (34-135)||(16015680-16015780)
chr7 (17-109)||(14595866-14595958)
chr7 (57-126)||(24965957-24966026)
chr7 (57-113)||(21048690-21048746)
chr7 (57-101)||(27820913-27820957)
[»] chr8 (6 HSPs)
chr8 (17-126)||(30590475-30590584)
chr8 (197-267)||(30590343-30590414)
chr8 (57-135)||(29053703-29053781)
chr8 (103-177)||(25971171-25971247)
chr8 (57-114)||(30014320-30014376)
chr8 (57-109)||(5692901-5692953)
[»] chr4 (9 HSPs)
chr4 (61-126)||(17912812-17912877)
chr4 (69-126)||(24001541-24001598)
chr4 (58-126)||(39778352-39778422)
chr4 (57-117)||(46676685-46676745)
chr4 (80-127)||(22572446-22572493)
chr4 (57-139)||(54595329-54595414)
chr4 (72-126)||(49190161-49190215)
chr4 (78-139)||(3137435-3137496)
chr4 (79-115)||(50816705-50816741)
[»] chr2 (8 HSPs)
chr2 (57-103)||(3008426-3008472)
chr2 (59-119)||(7252240-7252300)
chr2 (70-126)||(43275510-43275566)
chr2 (95-126)||(3185961-3185992)
chr2 (218-265)||(9889466-9889513)
chr2 (223-266)||(20135120-20135163)
chr2 (225-267)||(21373907-21373949)
chr2 (69-126)||(21216459-21216516)


Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 336
Target Start/End: Original strand, 54861550 - 54861871
Alignment:
Q  15 acatatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggta 114  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54861550 acatatggcatatgcagtgtttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggta 54861649  T
Q  115 tcagagcctatcttatatctgttgtggctttccgtatcgtctacacttcaggcttattgggaccgagtgtgaggggttgtggtggaaattctgccaccat 214  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  54861650 tgagagcctatcttatatctgttgtggctttccgtatcgtctacacttcaggcttattgggaccgagtgtgaggggttgtggtggaaattctgccatcat 54861749  T
Q  215 tgtgaccacccctagctgcctaattaaggcatttgtgttgccttcattgcagctccgcatccctcaagccgattttgtatgatggagttaatctaccctt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54861750 tgtgaccacccctagctgcctaattaaggcatttgtgttgccttcattgcagctccggatccctcaagccgattttgtatgatggagttaatctaccctt 54861849  T
Q  315 tgtattttgaataagaataatc 336  Q
    ||||||||||||||||||||||    
T  54861850 tgtattttgaataagaataatc 54861871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 173
Target Start/End: Original strand, 25568541 - 25568682
Alignment:
Q  34 tttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatc 133  Q
    |||||||| |||||| |||  | ||||||| |||  |||| |||||||||||||| |||||| ||||||| |  |||||||| ||||||||||||| ||     
T  25568541 tttataaaccttgggcagctttcaccttactagccggtttcgttaggttgagttaggcccaaaccaaattctgtgatggtattagagcctatcttagatt 25568640  T
Q  134 tgttgt--ggctttccgtatcgtctacacttcaggcttattg 173  Q
    ||||||  ||||| |||  ||||||||  |||||||| ||||    
T  25568641 tgttgttgggcttcccgcgtcgtctacggttcaggctaattg 25568682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 35018507 - 35018577
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacc-caaattttaagatggtatcagagcctatc 126  Q
    |||||||||||| | ||||| |||| |||||| |||||||| |||||| ||||||| ||||||||||||||    
T  35018507 accttacaagctgggtttgtaaggtcgagttaggcccaaccacaaattctaagatgatatcagagcctatc 35018577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 51917802 - 51917844
Alignment:
Q  223 cccctagctgcctaattaaggcatttgtgttgccttcattgca 265  Q
    ||||||||||||||||| | ||||||| |||||||||||||||    
T  51917802 cccctagctgcctaattgaagcatttgggttgccttcattgca 51917844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 30326938 - 30327003
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcc 122  Q
    |||||||||||  ||||||| || || ||||| |||||||||| ||| ||||||||||| ||||||    
T  30326938 accttacaagccggttttgtgagtttaagttaggcccaacccagattctaagatggtattagagcc 30327003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 58 - 265
Target Start/End: Complemental strand, 19811047 - 19810837
Alignment:
Q  58 ccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgttg--tggctttccgtatcgtc 155  Q
    ||||||||||  ||||||| ||||||| ||| ||| ||||||||||||||||||||||||||| ||||| || ||||||||   ||||| ||| ||||||    
T  19811047 ccttacaagccggttttgtaaggttgacttaggccgaacccaaattttaagatggtatcagagactatcctagatctgttgcagggcttcccgcatcgtc 19810948  T
Q  156 tacacttcaggcttattgggaccgagtgtgaggggttgtggtggaaattctgccaccattgt-gaccacccctagctgcctaattaaggcatttgtgttg 254  Q
     || ||||||||| |||||| | |||  ||||||| | ||||||||||||||||   ||||| | ||||||||||||||||||||  |||||||| ||||    
T  19810947 cacgcttcaggctcattgggcctgagcctgagggggtatggtggaaattctgccttaattgtggtccacccctagctgcctaattgcggcatttgggttg 19810848  T
Q  255 ccttcattgca 265  Q
     ||||||||||    
T  19810847 gcttcattgca 19810837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 41590599 - 41590452
Alignment:
Q  34 tttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatc 133  Q
    ||||||||||||||| | |  | | |||||||||  |||| || ||||||||||| ||| |||||||||| |||||||||||||||||||||| || ||     
T  41590599 tttataaagcttgggcaaccctcatcttacaagccggtttcgtaaggttgagttaggcc-aacccaaattctaagatggtatcagagcctatcctagata 41590501  T
Q  134 tgttgt-ggctttccgtatcgtctacacttcaggcttattgggaccgag 181  Q
    |||| | ||||| | |||||||| | |||||||||| |||||| |||||    
T  41590500 tgttatgggcttactgtatcgtccatacttcaggctaattgggcccgag 41590452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 19810018 - 19809943
Alignment:
Q  34 tttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 109  Q
    ||||||||||||||| |||  | |||||||||||   |||||| ||||||||||| |||||||||||| |||||||    
T  19810018 tttataaagcttgggcagccttcaccttacaagccgattttgtaaggttgagttaggcccaacccaaaatttaaga 19809943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 40571594 - 40571675
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgttgt 139  Q
    |||||||||| | ||||||| ||||||||||| |||||| ||||| ||||||||||||||| || ||||| |  |||||||||    
T  40571594 accttacaagttggttttgtaaggttgagttaggcccaatccaaa-tttaagatggtatcaaagtctatccttgatctgttgt 40571675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 10239500 - 10239549
Alignment:
Q  59 cttacaagctagttttgttaggttgagttacgcccaacccaaattttaag 108  Q
    ||||||||| |||||||| ||||||||||| ||||||||||| |||||||    
T  10239500 cttacaagccagttttgtaaggttgagttaggcccaacccaagttttaag 10239549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 347110 - 347170
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatca 117  Q
    |||||||||||| ||||||| ||||||||||| | |||||||||||| ||| ||| |||||    
T  347110 accttacaagctggttttgtaaggttgagttagggccaacccaaattctaatatgttatca 347170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 17557760 - 17557708
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 109  Q
    ||||||||||||  |||||| ||||||||||| |||||||||||||| |||||    
T  17557760 accttacaagctgattttgtaaggttgagttaggcccaacccaaattctaaga 17557708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 40566102 - 40566046
Alignment:
Q  70 gttttgttaggttgagttacgcccaacccaaattt-taagatggtatcagagcctat 125  Q
    ||||||| |||||| |||| |||||||||||| || |||||||||||||||||||||    
T  40566102 gttttgtaaggttgggttatgcccaacccaaaattctaagatggtatcagagcctat 40566046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 21641444 - 21641405
Alignment:
Q  70 gttttgttaggttgagttacgcccaacccaaattttaaga 109  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  21641444 gttttgtaaggttgagttaggcccaacccaaattttaaga 21641405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 40188709 - 40188675
Alignment:
Q  92 ccaacccaaattttaagatggtatcagagcctatc 126  Q
    |||||||||||||||||||||| ||||||||||||    
T  40188709 ccaacccaaattttaagatggtgtcagagcctatc 40188675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 1306057 - 1306098
Alignment:
Q  79 ggttgagttacgcccaacccaaattttaagatggtatcagag 120  Q
    |||||||||  |||||||| ||||||||||||||||||||||    
T  1306057 ggttgagtttggcccaaccaaaattttaagatggtatcagag 1306098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 7525054 - 7525107
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagat 110  Q
    |||||||||||| ||||||| ||||||||||| || ||| ||||||| ||||||    
T  7525054 accttacaagctggttttgtaaggttgagttaggctcaatccaaattctaagat 7525107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 126
Target Start/End: Original strand, 9632291 - 9632320
Alignment:
Q  97 ccaaattttaagatggtatcagagcctatc 126  Q
    ||||||||||||||||||||||||||||||    
T  9632291 ccaaattttaagatggtatcagagcctatc 9632320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 11584349 - 11584398
Alignment:
Q  71 ttttgttaggttgagttacgcccaacccaaattttaagatggtatcagag 120  Q
    |||||||||| ||||||| | |||||||||||| ||| ||||||||||||    
T  11584349 ttttgttaggctgagttaggtccaacccaaattctaatatggtatcagag 11584398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 19810775 - 19810683
Alignment:
Q  17 atatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 109  Q
    ||||||| | |||| | ||||||||||||||| | |  | |||||| ||||   |||||| |||||||| || ||||||||||||||||||||    
T  19810775 atatggcctgtgcaatgtttataaagcttgggcaaccttcaccttagaagccgattttgtaaggttgagctaggcccaacccaaattttaaga 19810683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 19811193 - 19811149
Alignment:
Q  223 cccctagctgcctaattaaggcatttgtgttgccttcattgcagc 267  Q
    |||||||| ||||||||  |||||||| |||||||||||||||||    
T  19811193 cccctagccgcctaattgtggcatttgggttgccttcattgcagc 19811149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 27829719 - 27829747
Alignment:
Q  98 caaattttaagatggtatcagagcctatc 126  Q
    |||||||||||||||||||||||||||||    
T  27829719 caaattttaagatggtatcagagcctatc 27829747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 34 - 267
Target Start/End: Complemental strand, 1206239 - 1206002
Alignment:
Q  34 tttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatc 133  Q
    |||||||||||| || |||  | |||||||||||| | ||||| ||| | ||||| | |||||||||||| ||||||||||||||| |||||| |||| |    
T  1206239 tttataaagcttaggcagccctcaccttacaagctggatttgtaaggctaagttaggtccaacccaaattctaagatggtatcagaacctatcctatacc 1206140  T
Q  134 tgttgt--ggctttccgtatcgtctacacttcaggcttatt-gggaccgagtgtgaggggttgtggtggaaattctgccaccattg-tgaccacccctag 229  Q
    ||||||  ||||||| | ||||||||| ||||| | | ||| ||| | |||  ||||||  |||| |||||||||||||  |||||  | || |||||||    
T  1206139 tgttgttaggctttctgcatcgtctacgcttcaagttcattcgggcctgagcatgagggtgtgtgttggaaattctgccttcattgcggtccgcccctag 1206040  T
Q  230 ctgcctaattaaggcatttgtgttgccttcattgcagc 267  Q
    | ||||||||  |||||||| |||||||||||||||||    
T  1206039 ccgcctaattgcggcatttgggttgccttcattgcagc 1206002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 19385574 - 19385642
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 126  Q
    ||||| |||||| |||||||  |||||||||| || || |||||||| ||||||||||||| ||||||||    
T  19385574 acctttcaagctggttttgtatggttgagttaggctca-cccaaattctaagatggtatcaaagcctatc 19385642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 15844562 - 15844493
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 126  Q
    ||||||| ||| |||||||| || |||||||| |||||||||||||||||||||||| ||||||||||||    
T  15844562 accttactagccagttttgtaagattgagttaggcccaacccaaattttaagatggtgtcagagcctatc 15844493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 31973511 - 31973267
Alignment:
Q  17 atatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatc 116  Q
    ||||||| |||| ||| ||||||||| ||||| |||  | |||| ||| ||| ||||||| |||||    || |||||||||||||| ||||||||||||    
T  31973511 atatggcctatgtagtgtttataaagtttgggcagccctcacctcacacgctggttttgtaaggtt----tatgcccaacccaaattctaagatggtatc 31973416  T
Q  117 agagcctatcttatatctgttg-tggctttccgtatcgtctacacttcaggcttattgggaccgagtgtgaggggttgtggtggaaattctgccaccatt 215  Q
    |||| ||||  || || ||||| ||  |||||| |  ||| || |||| |||| |||||| ||||| |||||||  |||| |||||||||||||  ||||    
T  31973415 agagtctatactagatatgttgttgtgtttccgcactgtccacgcttctggctcattgggcccgagcgtgagggagtgtgttggaaattctgccttcatt 31973316  T
Q  216 g-tgaccacccctagctgcctaattaaggcatttgtgttgccttcattg 263  Q
    |  | || |||| ||| ||||||||  |||||||| ||| |||||||||    
T  31973315 gcagtccgcccccagccgcctaattgcggcatttgggtttccttcattg 31973267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 40261092 - 40261034
Alignment:
Q  80 gttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgttg 138  Q
    ||||| ||| |||||||||||||| ||| ||||||||||| ||||||| ||||||||||    
T  40261092 gttgaattaggcccaacccaaattctaatatggtatcagaacctatctaatatctgttg 40261034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 22199025 - 22198986
Alignment:
Q  70 gttttgttaggttgagttacgcccaacccaaattttaaga 109  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  22199025 gttttgtaaggttgagttaggcccaacccaaattttaaga 22198986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 39079975 - 39079899
Alignment:
Q  60 ttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgt 136  Q
    ||||||||  ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||| || ||||||    
T  39079975 ttacaagccggttttgtaaggtttagttaggcccaacccaaattttaagatggcatcagagcctatcctagatctgt 39079899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 16015486 - 16015394
Alignment:
Q  17 atatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 109  Q
    ||||||||| || ||| ||||||||| ||||| |||  | |||||| ||||| ||||||| ||||||||||| | |||| |||||||||||||    
T  16015486 atatggcatgtgtagtgtttataaagtttgggcagccctcaccttaaaagctggttttgtaaggttgagttaggtccaatccaaattttaaga 16015394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 14596252 - 14596152
Alignment:
Q  34 tttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatc 133  Q
    |||| |||||||||| |||  | |||||||||||  |||| || ||||||||||| |||||| | ||||||||||||| ||| |||||||||| || |||    
T  14596252 tttagaaagcttgggcagccctcaccttacaagccggttt-gtaaggttgagttaggcccaatcaaaattttaagatgatattagagcctatcctagatc 14596154  T
Q  134 tg 135  Q
    ||    
T  14596153 tg 14596152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 16015780 - 16015680
Alignment:
Q  34 tttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatc 133  Q
    |||| |||||||||| |||  | |||||||||| | | ||||| ||||||||||| |||||| | ||||||||||||| ||| |||||||||| || |||    
T  16015780 tttagaaagcttgggcagccctcaccttacaag-tcggtttgtaaggttgagttaggcccaatcaaaattttaagatgatattagagcctatcctagatc 16015682  T
Q  134 tg 135  Q
    ||    
T  16015681 tg 16015680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 14595958 - 14595866
Alignment:
Q  17 atatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 109  Q
    ||||||||| || ||| ||||||||| ||||| |||  | |||||| ||||  ||||||| ||||||||||| | |||| |||||||||||||    
T  14595958 atatggcatgtgtagtgtttataaagtttgggcagccctcaccttaaaagccggttttgtaaggttgagttaggtccaatccaaattttaaga 14595866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 24966026 - 24965957
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 126  Q
    |||||||| | | |||||||  |||||||||  | |||||||||||||| |||| |||||||||||||||    
T  24966026 accttacacgttggttttgtagggttgagttgggtccaacccaaattttgagatagtatcagagcctatc 24965957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 21048746 - 21048690
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggt 113  Q
    ||||||||||| | |||| | ||||||||||| || ||||||||||| |||||||||    
T  21048746 accttacaagccaattttataaggttgagttaggctcaacccaaattctaagatggt 21048690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 27820913 - 27820957
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacccaaa 101  Q
    ||||||||||| |||||||| ||||||||||| ||| ||||||||    
T  27820913 accttacaagccagttttgtaaggttgagttaggccgaacccaaa 27820957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 30590475 - 30590584
Alignment:
Q  17 atatggcatatgcagtatttataaagcttgggtagcagttaccttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatc 116  Q
    ||||||||| || ||| ||||||||||||||| |||  | |||||||||||  ||||||| ||||||| ||| ||| | |||||||| ||| ||||||||    
T  30590475 atatggcatgtgtagtgtttataaagcttgggcagccctcaccttacaagccggttttgtaaggttgacttaggcctagcccaaattctaatatggtatc 30590574  T
Q  117 agagcctatc 126  Q
    | ||||||||    
T  30590575 aaagcctatc 30590584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 30590343 - 30590414
Alignment:
Q  197 tggaaattctgccaccattgtgac-cacccctagctgcctaattaaggcatttgtgttgccttcattgcagc 267  Q
    ||||||||||||| ||||||||   ||||||||||||||||| |   ||||||| |||||||||||||||||    
T  30590343 tggaaattctgcctccattgtggttcacccctagctgcctaactgtagcatttgggttgccttcattgcagc 30590414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 29053781 - 29053703
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctg 135  Q
    |||||||||| ||||||||| |||||||||||    ||||| ||||| ||||||||||| ||||| |||| || |||||    
T  29053781 accttacaagttagttttgtaaggttgagttaaattcaaccgaaattctaagatggtattagagcttatcctagatctg 29053703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 25971171 - 25971247
Alignment:
Q  103 tttaagatggtatcagagcctatcttatatctgttgt--ggctttccgtatcgtctacacttcaggcttattgggac 177  Q
    |||||||||| ||||||||||||| || |||||||||  | ||| ||| |||||| |||||||||||| | ||||||    
T  25971171 tttaagatggaatcagagcctatcctagatctgttgttggacttcccgcatcgtccacacttcaggctcactgggac 25971247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 30014376 - 30014320
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggta 114  Q
    ||||||||| || |||| || ||||||||||| || ||||||||||||||||||||||    
T  30014376 accttacaacctggtttcgtaaggttgagtta-gctcaacccaaattttaagatggta 30014320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 5692953 - 5692901
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaaga 109  Q
    |||||||||| |||||||||  |||||||||| ||  ||||||||||||||||    
T  5692953 accttacaagttagttttgtagggttgagttaagcttaacccaaattttaaga 5692901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 17912812 - 17912877
Alignment:
Q  61 tacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 126  Q
    |||||||  |||||||  |||||||||| |||||||||||||||||||||||||| ||||||||||    
T  17912812 tacaagccggttttgtagggttgagttaggcccaacccaaattttaagatggtatgagagcctatc 17912877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 24001541 - 24001598
Alignment:
Q  69 agttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 126  Q
    |||||||| ||||||||||| |||||||||||||| |||||| ||||||||| |||||    
T  24001541 agttttgtaaggttgagttaagcccaacccaaattctaagatagtatcagagtctatc 24001598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 39778422 - 39778352
Alignment:
Q  58 ccttacaagctagttttgttagg-ttgagttacgcccaacccaaa-ttttaagatggtatcagagcctatc 126  Q
    ||||||||||| ||||||| ||| |||||||| |||||||||||| ||||||| |||||||||||| ||||    
T  39778422 ccttacaagctggttttgtaagggttgagttaggcccaacccaaaattttaagctggtatcagagcatatc 39778352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 46676685 - 46676745
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatca 117  Q
    |||||||||| | |||||||  |||||||||| | |||||||||||||||||||| |||||    
T  46676685 accttacaagatggttttgtagggttgagttaggtccaacccaaattttaagatgatatca 46676745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 22572446 - 22572493
Alignment:
Q  80 gttgagttacgcccaacccaaattttaagatggtatcagagcctatct 127  Q
    ||||||||| | |||||||||| ||||||||| |||||||||||||||    
T  22572446 gttgagttaggaccaacccaaaatttaagatgatatcagagcctatct 22572493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 54595414 - 54595329
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacccaaattt---taagatggtatcagagcctatcttatatctgttgt 139  Q
    ||||||||||| |||||||  ||||||||||| |||||||||||| ||    |||||||||| |||||||||| || || ||||||    
T  54595414 accttacaagcaagttttgcgaggttgagttaagcccaacccaaaattataaaagatggtattagagcctatcctagatttgttgt 54595329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 49190215 - 49190161
Alignment:
Q  72 tttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 126  Q
    ||||| || |||||||  || ||||||||||| ||||||||||||||||||||||    
T  49190215 tttgtaagattgagtttggctcaacccaaattctaagatggtatcagagcctatc 49190161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 3137496 - 3137435
Alignment:
Q  78 aggttgagttacgcccaacccaaattttaagatggtatcagagcctatcttatatctgttgt 139  Q
    ||||||| ||| ||||||||||||||  ||||| |||| |||||||||| || |||||||||    
T  3137496 aggttgatttaggcccaacccaaattccaagatagtattagagcctatcctaaatctgttgt 3137435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 50816741 - 50816705
Alignment:
Q  79 ggttgagttacgcccaacccaaattttaagatggtat 115  Q
    |||||||||| |||||||||||||||| |||||||||    
T  50816741 ggttgagttaggcccaacccaaattttgagatggtat 50816705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 3008426 - 3008472
Alignment:
Q  57 accttacaagctagttttgttaggttgagttacgcccaacccaaatt 103  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||||    
T  3008426 accttacaagccagttttgtaaggttgagttaggcccaacccaaatt 3008472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 7252240 - 7252300
Alignment:
Q  59 cttacaagctagttttgttaggttgagttacgcccaacccaaattttaagatggtatcaga 119  Q
    |||||||| | |||||||  |||||||||| || ||||||||||| |||||||||||||||    
T  7252240 cttacaagttggttttgtagggttgagttaggctcaacccaaattctaagatggtatcaga 7252300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 43275510 - 43275566
Alignment:
Q  70 gttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 126  Q
    ||||||| ||||| |||||  ||||||||||| ||||| ||||||||||||||||||    
T  43275510 gttttgtaaggttcagttagtcccaacccaaagtttaatatggtatcagagcctatc 43275566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 126
Target Start/End: Original strand, 3185961 - 3185992
Alignment:
Q  95 acccaaattttaagatggtatcagagcctatc 126  Q
    ||||||||||||||||||||||||||||||||    
T  3185961 acccaaattttaagatggtatcagagcctatc 3185992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 265
Target Start/End: Complemental strand, 9889513 - 9889466
Alignment:
Q  218 gaccacccctagctgcctaattaaggcatttgtgttgccttcattgca 265  Q
    |||||||||||||| |||||||  |||||||| |||||||||||||||    
T  9889513 gaccacccctagcttcctaattgtggcatttgggttgccttcattgca 9889466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 266
Target Start/End: Complemental strand, 20135163 - 20135120
Alignment:
Q  223 cccctagctgcctaattaaggcatttgtgttgccttcattgcag 266  Q
    |||| ||||||||||||  |||||||||||||||||||||||||    
T  20135163 ccccaagctgcctaattgtggcatttgtgttgccttcattgcag 20135120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 21373907 - 21373949
Alignment:
Q  225 cctagctgcctaattaaggcatttgtgttgccttcattgcagc 267  Q
    |||||||||||| ||  ||||||||||||||||||||||||||    
T  21373907 cctagctgcctacttgcggcatttgtgttgccttcattgcagc 21373949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 21216516 - 21216459
Alignment:
Q  69 agttttgttaggttgagttacgcccaacccaaattttaagatggtatcagagcctatc 126  Q
    ||||||||  |||||||||| |||||| | |||||||||||||||||  |||||||||    
T  21216516 agttttgtggggttgagttaagcccaatcaaaattttaagatggtattggagcctatc 21216459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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