View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4611-Insertion-1 (Length: 925)
Name: NF4611-Insertion-1
Description: NF4611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4611-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 620; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 8 - 913
Target Start/End: Original strand, 33993569 - 33994473
Alignment:
| Q |
8 |
gaaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataat |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993569 |
gaaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataat |
33993668 |
T |
|
| Q |
108 |
catgctgatgctgttgggtttataaagctttatggtcttccaatgaggatcagagccatgatggaacaaggcatttaaatgttactttgtttggactatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993669 |
catgctgatgctgttgggtttataaagctttatggtcttccaatgaggatcagagccatgatggaacaaggcatttaaatgttactttgtttggactatt |
33993768 |
T |
|
| Q |
208 |
annnnnnnnnnnnnnncttgcttgttcttgacaatgtttgtggaacttttattattgtgggaaataaatgacgtgaagtgattggcatgtgcttagagaa |
307 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993769 |
atgtgtgtgtgtgt--cttgcttgttcttgacaatgtttgtggaacttttattattgtgggaaataaatgacgtgaagtgattggcatgtgcttagagaa |
33993866 |
T |
|
| Q |
308 |
gcaaacttgattcgaataaagctatttgtttggcaaaactgcatcatgaatcctttattaccatttttcatgccgagttagtcatttat----------- |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33993867 |
gcaaacttgattcgaataaagctatttgtttggcaaaactgcatcatgaatcctttattaccatttttcatgtcgagttagtcatttatgtttaaaaatg |
33993966 |
T |
|
| Q |
397 |
------aatgtcaatattgttggaccaaacttcactttttcatcctacgctatcaaaagccttacgtggccattcaaaaagataaatttacattttcgat |
490 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
33993967 |
tttaagaatgtcaatatt-ttggaccaaacttcactttt-catcctacgctatcaaaagccttacgtggccattcaaaaagataaatt-acattttcgat |
33994063 |
T |
|
| Q |
491 |
tcatcaagaaaacatctaaattacatcatagtgagtgttttaatatccaatccatcaaaatcaacacatcnnnnnnnnnnnnnatctaaggttgtgattt |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
33994064 |
tcatcaagaaaacatctaaattacatcatagtgagtgttataatatccaatccatcaaaattaacacatcttttttagtttttatctaaggttgtgattt |
33994163 |
T |
|
| Q |
591 |
tcttgtcaaagatggtgtacataattgtgggtgctgagtgatgaaacatatgttatagtaaatcactcattgattatgtacacaaatttgtaatagaagt |
690 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33994164 |
tcttgtcaaagatggtgtacataattgtgg-tgctgagtgatgaaacatttgttatagtaaatcactcattgattatgtacacaaatttgtaatagaagt |
33994262 |
T |
|
| Q |
691 |
ggattaagaaagaaagttggatcaatggattgaacatttttaaagataaaggattaatttgacaaaacgaaaaagataaaaatttggcaggttttgccaa |
790 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||||| |||| |
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|
| T |
33994263 |
ggattaagaaagaaagttggatcaatggattgaacatttttaaagataaatgattaatttgacaaaacaaaaaagataaaaattt-gca-gttttaccaa |
33994360 |
T |
|
| Q |
791 |
tcatataattatttccactcaatcaatcccagattcacgctcaattcaaattccaagttgcaaaagtgattaggttgataaaaataagaatgccaaagtg |
890 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| ||| |||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
33994361 |
tcatataattatttccactcaatcaat-tcagattcacgctcaat--caattcaaag-tgc-aaagtgattaggtt-ataaaaataagaatg-caaagtg |
33994453 |
T |
|
| Q |
891 |
gcccagggccccaagggggcatt |
913 |
Q |
| |
|
| ||||||||| |||||||||| |
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|
| T |
33994454 |
g-ccagggccc--agggggcatt |
33994473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 34000571 - 34000617
Alignment:
| Q |
8 |
gaaactgtataaaggtagtgcttctgtgacgggtcggaagagtcctt |
54 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34000571 |
gaaactgtataaaggcagtgcttctgtgacgggtcggaagagtcctt |
34000617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 666 - 754
Target Start/End: Complemental strand, 10196261 - 10196173
Alignment:
| Q |
666 |
atgtacacaaatttgtaatagaagtggattaagaaagaaagttggatcaatggattgaacatttttaaagataaaggattaatttgaca |
754 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| || ||||||||| |||| || |||||| ||||||||||||| || |||||||||| |
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|
| T |
10196261 |
atgtacacaaatttgtaacagaagtggactaaaaatgaaagttggttcaacggtgtgaacaattttaaagataaaagactaatttgaca |
10196173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 620 - 754
Target Start/End: Original strand, 41633368 - 41633502
Alignment:
| Q |
620 |
ggtgctgagtgatgaaacatatgttatagtaaatcactcattgattatgtacacaaatttgtaatagaagtggattaagaaagaaagttggatcaatgga |
719 |
Q |
| |
|
||||||||||| |||||| | |||||||| |||| ||| |||| |||||||||||||| ||| |||||| || |||||| |||| ||| |||| || |
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|
| T |
41633368 |
ggtgctgagtggtgaaacgttctttatagtatatcattcaatgatcatgtacacaaatttataacagaagtcgactaagaataaaagatggttcaaaggt |
41633467 |
T |
|
| Q |
720 |
ttgaacatttttaaagataaaggattaatttgaca |
754 |
Q |
| |
|
| |||||||| ||||||||| || |||||||||| |
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|
| T |
41633468 |
gtaaacattttgaaagataaaagaataatttgaca |
41633502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 643 - 770
Target Start/End: Complemental strand, 12692681 - 12692555
Alignment:
| Q |
643 |
ttatagtaaatcactcattgattatgtacacaaatttgtaatagaagtggattaagaaagaaagttggatcaatggattgaacatttttaaagataaagg |
742 |
Q |
| |
|
|||||||| |||| |||||||| | | |||||||||||||| | | ||| | |||||| ||||||||| ||||||| | |||||||||||||||||| | |
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|
| T |
12692681 |
ttatagtatatcattcattgatcacgcacacaaatttgtaacata-gtgaactaagaatgaaagttggttcaatggtgtaaacatttttaaagataaaag |
12692583 |
T |
|
| Q |
743 |
attaatttgacaaaacgaaaaagataaa |
770 |
Q |
| |
|
| |||||||||| | ||||||||||| |
|
|
| T |
12692582 |
actaatttgacacgaaaaaaaagataaa |
12692555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 460 - 520
Target Start/End: Complemental strand, 41194314 - 41194255
Alignment:
| Q |
460 |
ccattcaaaaagataaatttacattttcgattcatcaagaaaacatctaaattacatcata |
520 |
Q |
| |
|
||||| ||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
41194314 |
ccatttaaaaagataaatt-acatcttcaattcatcaagataacatctaaattacatcata |
41194255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 661 - 755
Target Start/End: Complemental strand, 3741004 - 3740910
Alignment:
| Q |
661 |
tgattatgtacacaaatttgtaatagaagtggattaagaaagaaagttggatcaatggattgaacatttttaaagataaaggattaatttgacaa |
755 |
Q |
| |
|
|||| |||||| |||||| | |||| ||||||| |||||| |||||||| || |||| | ||||||||||||||||||||| | ||||||||| |
|
|
| T |
3741004 |
tgatcatgtactcaaattagcaatataagtggactaagaatgaaagttgattctatggtataaacatttttaaagataaaggactgatttgacaa |
3740910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 149
Target Start/End: Complemental strand, 42865474 - 42865369
Alignment:
| Q |
44 |
gaagagtccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataatcatgctgatgctgttgggtttataaagctttatggt |
143 |
Q |
| |
|
||||||||||| ||| | |||||| ||||||| || ||||||||| || | ||||||||| |||| |||||||||| ||| ||||| |||||| ||| |
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|
| T |
42865474 |
gaagagtccttttagcctgtataggcaagatatctcatcatttgagggtagtgagatatatgatcaagctgatgctgctggttttatccggctttacggt |
42865375 |
T |
|
| Q |
144 |
cttcca |
149 |
Q |
| |
|
|||||| |
|
|
| T |
42865374 |
cttcca |
42865369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 666 - 710
Target Start/End: Complemental strand, 43109911 - 43109867
Alignment:
| Q |
666 |
atgtacacaaatttgtaatagaagtggattaagaaagaaagttgg |
710 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| ||||||||| |
|
|
| T |
43109911 |
atgtacacaaatttgtaacataagtggattaagaatgaaagttgg |
43109867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 520
Target Start/End: Complemental strand, 19045269 - 19045238
Alignment:
| Q |
489 |
attcatcaagaaaacatctaaattacatcata |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
19045269 |
attcatcaagaaaacatctaaattacatcata |
19045238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 190
Target Start/End: Complemental strand, 18852344 - 18852217
Alignment:
| Q |
63 |
tatagggaagatatttcttcatttgagagtggggagatatataatcatgctgatgctgttgggtttataaagctttatggtcttccaatgaggatcagag |
162 |
Q |
| |
|
|||||| ||||||| || |||||||||| | | || |||||| |||| |||||||||| ||| ||||| |||||| ||||||||||||| | || | | |
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|
| T |
18852344 |
tataggcaagatatctcatcatttgagaatagtgatatatatgatcaagctgatgctgctggttttatccggctttacggtcttccaatgaaggtccggg |
18852245 |
T |
|
| Q |
163 |
ccatgatggaacaaggcatttaaatgtt |
190 |
Q |
| |
|
| ||| | || |||||||||||| |||| |
|
|
| T |
18852244 |
caatgcttgagcaaggcatttaagtgtt |
18852217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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