View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4611-Insertion-2 (Length: 752)
Name: NF4611-Insertion-2
Description: NF4611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4611-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 546
Target Start/End: Original strand, 6699881 - 6700418
Alignment:
| Q |
8 |
atgagttatatctactttataagataaattaaagttttagtgtacgtttatttttaattttggagggg-caaaattgattctt-aagaatgtagaattga |
105 |
Q |
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| T |
6699881 |
atgagttatatctactttataagataaattaaagttttagtgtacgtttagttttaatgttagagggggcaaaattgattctttaagagtgtagaattga |
6699980 |
T |
|
| Q |
106 |
ttttatcatgttttgttaaaaaattgattttaatgcattgtgagctaagcttaggagaattaaaaaattgattttgtttgtagagctagaatttgtagct |
205 |
Q |
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| T |
6699981 |
ttttatcacgttttgttaaaaaattgattttaatgcaac-tgagctaagtttatggggactaaaaaattaattttgtttttagagctagaatttgtagct |
6700079 |
T |
|
| Q |
206 |
tttgtcctctaaaattcattttaatcttaaatggaaaggatctttattccagctttcttgagcaatcaaaactattgtggaccatgttctgcttgaaagn |
305 |
Q |
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| T |
6700080 |
tttatcctctaaaattcattttaatcttaaatggagaggatctttattcctgttttcttgagcaatcaaaactattgtggactatgttctacttgaaaga |
6700179 |
T |
|
| Q |
306 |
nnnnnnnctattacggggtgtgctattttttatttgactcaactattgtagacaacattagctattaattaacttgattgatcctttactttaattctat |
405 |
Q |
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| T |
6700180 |
aaaaaaactattacgggctgtgctattttttatttgactcaactattgtagacaacattagctattaattaacttaattgatcctttactttaattctat |
6700279 |
T |
|
| Q |
406 |
ttttattaacacaaaattttaatcctattgattaatttcccgnnnnnnnnnnnactcttacttaattttttaggctaaaaatgatgatgttgcaagtttt |
505 |
Q |
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| T |
6700280 |
ttttattaatacaaaattttaatcctattgattaaattccc--ttttttttttactcttacagaaatttttagactaaaaatgatgatgttgcaagtttt |
6700377 |
T |
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| Q |
506 |
aaacgataagtcatacgatgtgatatgatcaacatatatga |
546 |
Q |
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| T |
6700378 |
aaacgatgagtcatacgatgtgatatgatcaacatatatga |
6700418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 652 - 747
Target Start/End: Original strand, 6700503 - 6700596
Alignment:
| Q |
652 |
tacaacttcgtatagtgcgttacaacaccactttttaatttagaaattttagatatgggtggtctaatcctcttatgtgttttgggagttgctact |
747 |
Q |
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| T |
6700503 |
tacaacttcgtatagggcgttacaacaccactttttaatttagaaattttagatat-gatggcctaatcctcttatgt-acttgggagttgctact |
6700596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 35198886 - 35198959
Alignment:
| Q |
45 |
tagtgtacgtttatttttaattttggaggggcaaaattgattcttaagaatgtagaattgattttatcatgttt |
118 |
Q |
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| T |
35198886 |
tagtgtatgtttggttttaaatttggagggtcaaaattgattctataggttgaagaattgattttatcatgttt |
35198959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 25129720 - 25129643
Alignment:
| Q |
42 |
ttttagtgtacgtttatttttaattttggagggg-caaaattgattcttaagaatgtagaattgattttatcatgttt |
118 |
Q |
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| T |
25129720 |
ttttagtgtatgtttggtttcaattttcgaggggtcaaaattgattctagaggttgtagaattgattttatcatgttt |
25129643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 38716773 - 38716831
Alignment:
| Q |
60 |
tttaattttggaggggcaaaattgattcttaagaatgtagaattgattttatcatgttt |
118 |
Q |
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| T |
38716773 |
tttaattttggagggtcaaaagtgattctagagattgtaaaattgattttatcaagttt |
38716831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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