View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4611-Insertion-3 (Length: 297)
Name: NF4611-Insertion-3
Description: NF4611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4611-Insertion-3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 297
Target Start/End: Original strand, 11834874 - 11835165
Alignment:
| Q |
6 |
caatggaaacagtttatctggtgattttccttacatgccaatttcacttcagcatttgtctattggtaacaacaatttcgcttcgatgccgagtgatttc |
105 |
Q |
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| T |
11834874 |
caatggaaacagtttatctggtgattttccttacatgccaatttcacttcagcatttgtctattggtaacaacaatttcgcttcgatgccgagtgatttc |
11834973 |
T |
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| Q |
106 |
ttcgccaacatgagtaatttgattgatgtgagtattggttataacccttttcctcaatagcaaattccttctagtcttaagaattgtttggcccttcaga |
205 |
Q |
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| T |
11834974 |
ttcgccaacatgagtaatttgattgatgtgagtattggttataacccttttcctcaatggcaaattccttctagtcttaagaattgtttggcccttcaga |
11835073 |
T |
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| Q |
206 |
cattttctgctataaatgctagttttgttggtataatccctgaattctttggaaaagaaacttttccagctttaactgatttgtctctgtct |
297 |
Q |
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| T |
11835074 |
cattttctgctataaatgctagttttgttggtataatccctgaattctttggaaaagaaacttttccagctttaactgatttgtctctgtct |
11835165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 6 - 297
Target Start/End: Complemental strand, 11858890 - 11858599
Alignment:
| Q |
6 |
caatggaaacagtttatctggtgattttccttacatgccaatttcacttcagcatttgtctattggtaacaacaatttcgcttcgatgccgagtgatttc |
105 |
Q |
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| T |
11858890 |
caatggaaacgctttatctggtgattttccttacatgccaagttcacttcagtttttgtatattaacaacaacaatttcacttccatgccaagtgatttc |
11858791 |
T |
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| Q |
106 |
ttcgccaacatgagtaatttgattgatgtgagtattggttataacccttttcctcaatagcaaattccttctagtcttaagaattgtttggcccttcaga |
205 |
Q |
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| T |
11858790 |
ttcacaaacatgagtaatttgatagaggtgagtattggttataacccttttcctcagtggcaaattccttctagtcttaagaattgtttagcccttaaag |
11858691 |
T |
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| Q |
206 |
cattttctgctataaatgctagttttgttggtataatccctgaattctttggaaaagaaacttttccagctttaactgatttgtctctgtct |
297 |
Q |
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| T |
11858690 |
ttttttctgctatgaatgctagtttagttggtgtaatccctgaattctttggaaaagaaacttttccaggtttgactaatttgtatctgtct |
11858599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 30 - 273
Target Start/End: Original strand, 11848284 - 11848527
Alignment:
| Q |
30 |
ttttccttacatgccaatttcacttcagcatttgtctattggtaacaacaatttcgcttcgatgccgagtgatttcttcgccaacatgagtaatttgatt |
129 |
Q |
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| T |
11848284 |
ttttccatacatgccaaattcacttcagaacttgtatatcagaaacaacagtttcacttccatgcctagtgatttcttcaccaacatgagtaatttgata |
11848383 |
T |
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| Q |
130 |
gatgtgagtattggttataacccttttcctcaatagcaaattccttctagtcttaagaattgtttggcccttcagacattttctgctataaatgctagtt |
229 |
Q |
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| T |
11848384 |
gaggtggtaattgattctaaccctttttctcagtggcaaattccttctagtcttaagaattgtttagcccttaagcttttttctgctaatagtgctggtt |
11848483 |
T |
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| Q |
230 |
ttgttggtataatccctgaattctttggaaaagaaacttttcca |
273 |
Q |
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| T |
11848484 |
tagttggtgtaatccctgaattctttggaaatgacacttttcca |
11848527 |
T |
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