View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4611_high_16 (Length: 313)

Name: NF4611_high_16
Description: NF4611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4611_high_16
NF4611_high_16
[»] chr6 (8 HSPs)
chr6 (1-286)||(6920932-6921215)
chr6 (1-235)||(6954147-6954384)
chr6 (1-236)||(6942589-6942832)
chr6 (3-154)||(6934945-6935096)
chr6 (3-202)||(6947493-6947695)
chr6 (5-153)||(20770829-20770982)
chr6 (1-137)||(17369860-17369996)
chr6 (198-238)||(17370022-17370062)
[»] chr7 (11 HSPs)
chr7 (3-202)||(1985617-1985818)
chr7 (8-132)||(15571632-15571756)
chr7 (1-153)||(14076849-14077001)
chr7 (1-153)||(14386877-14387029)
chr7 (1-120)||(13416657-13416776)
chr7 (71-215)||(18514468-18514618)
chr7 (80-152)||(22064356-22064428)
chr7 (80-147)||(19350803-19350870)
chr7 (70-144)||(19597401-19597475)
chr7 (80-118)||(22524940-22524978)
chr7 (80-152)||(18982666-18982738)
[»] scaffold0354 (1 HSPs)
scaffold0354 (1-228)||(7665-7887)
[»] chr4 (5 HSPs)
chr4 (80-153)||(53775101-53775174)
chr4 (80-118)||(2911335-2911373)
chr4 (80-150)||(11970722-11970792)
chr4 (176-237)||(53775166-53775226)
chr4 (83-151)||(11981422-11981490)
[»] chr5 (1 HSPs)
chr5 (1-141)||(18964561-18964701)
[»] chr2 (4 HSPs)
chr2 (80-140)||(18908517-18908577)
chr2 (1-145)||(14515069-14515217)
chr2 (80-140)||(18913265-18913325)
chr2 (80-147)||(20712266-20712331)
[»] scaffold0097 (1 HSPs)
scaffold0097 (80-147)||(16105-16170)
[»] chr8 (1 HSPs)
chr8 (80-144)||(27618727-27618791)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 6921215 - 6920932
Alignment:
Q  1 aattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  6921215 aattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaattttgtggttcactgccaagggatatgttgaaagcttggtatcg 6921116  T
Q  101 acttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtgataatttcatatcatggtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  6921115 acttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtgataatt--atatcatggtt 6921018  T
Q  201 ttgatttgattatattgttgaatgattatctgttttattaactgtgaattttctcaattttatttactgttctaattttgagtttt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6921017 ttgatttgattatattgttgaatgattatctgttttattaactgtgaattttctcgattttatttactgttctaattttgagtttt 6920932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 6954384 - 6954147
Alignment:
Q  1 aattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcg 100  Q
    ||||||||||||||  ||| |||||||||||| || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6954384 aattctctataatttaaaaaataatagagcaacgagaattaaaagtaccaataaaatttggtggtccgctgccaagggatatgttgaaagcttggtatcg 6954285  T
Q  101 acttcttgaaagtaagtttttgtt-cgatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtga-taatttcatatcatgg 198  Q
    |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||    
T  6954284 acttcttgaaagtatgttttttttccgatgatttacttgtttgaatttgtgttagcttgtctatggtacaatgtattttgtgattattttcataccatgg 6954185  T
Q  199 ttttgatttgattatattg-ttgaatgattatctgttt 235  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  6954184 ttttgatttgattatattgtttgaatgattatctgttt 6954147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 6942832 - 6942589
Alignment:
Q  1 aattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcg 100  Q
    |||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6942832 aattctctataatttgaaagataatagagcaaagagaattaaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatca 6942733  T
Q  101 acttcttgaaagtaagtttttgttcgatgatttactt-------gtttgaatttgtgttagcttgtgtatggtacaatgtattttgtgataattt-cata 192  Q
    |||||||||||||||||||||||| ||| |||| | |        ||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||    
T  6942732 acttcttgaaagtaagtttttgtttgattatttccatatcatggttttgaatttgtgttagcttgtgtatggtagaatgtattttgtgattatttccata 6942633  T
Q  193 tcatggttttgatttgattatattgttgaatgattatctgtttt 236  Q
    ||||||||||||||| | ||||||||||||||||||||||||||    
T  6942632 tcatggttttgattttaatatattgttgaatgattatctgtttt 6942589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 6935096 - 6934945
Alignment:
Q  3 ttctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcgac 102  Q
    ||||||||||||||| |||||||| |||||||| |||| |||||| |  ||||| || ||||| || ||||||||||||||||||||| |||||||||||    
T  6935096 ttctctataattggagagataatacagcaaagagaattaaaagtaacggtaaaaatttgtggttcagtgccaagggatatgttgaaagtttggtatcgac 6934997  T
Q  103 ttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttag 154  Q
    |||||||| |||| ||| | ||| ||||||||||||||||||||||||||||    
T  6934996 ttcttgaaggtaattttctcttcaatgatttacttgtttgaatttgtgttag 6934945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 6947695 - 6947493
Alignment:
Q  3 ttctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcgac 102  Q
    ||||||||||||||| ||||||||||| ||||| |||| |||||||||| ||||||| ||||| || |||||| ||||||||||||||||||| |||||     
T  6947695 ttctctataattggagagataatagagtaaagagaattaaaagtaccaacaaaattttgtggttcagtgccaatggatatgttgaaagcttggcatcgat 6947596  T
Q  103 ttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatg--gtacaatgtattttgtga-taatttcatatcatggt 199  Q
     | ||||| |||||||| | || ||||||||||||||||| ||||| ||||| || ||||||  ||||||| |||| ||||| || ||||| ||||||||    
T  6947595 attttgaaggtaagtttctcttggatgatttacttgtttgtatttgagttagtttatgtatgatgtacaatatattgtgtgattattttcaaatcatggt 6947496  T
Q  200 ttt 202  Q
    |||    
T  6947495 ttt 6947493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 20770829 - 20770982
Alignment:
Q  5 ctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaa-----gcttggtatc 99  Q
    |||||||||| |||||||||||||  ||||| ||||||||||||| || ||||||||||||  | ||| ||||  ||||||||||     | ||||||||    
T  20770829 ctctataatttgaaagataatagactaaagagaattgaaagtacctatgaaatttggtggtatagtgctaaggattatgttgaaagtttggtttggtatc 20770928  T
Q  100 gacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtta 153  Q
    ||| | |||||||||||||  | |||||||||||||||||||||||||||||||    
T  20770929 gacctgttgaaagtaagttcctcttcgatgatttacttgtttgaatttgtgtta 20770982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 17369860 - 17369996
Alignment:
Q  1 aattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcg 100  Q
    ||||||||||||||||| | ||||||||| ||||| |||||||| |||| ||| ||||   |||    || ||||||| ||||||||||||||||||||     
T  17369860 aattctctataattggagaaataatagagtaaagaaaattgaaaatacctatagaattatttggaaggcttccaagggctatgttgaaagcttggtatct 17369959  T
Q  101 acttcttgaaagtaagtttttgttcgatgatttactt 137  Q
    |||| |||||||||||||  | |||||||||||||||    
T  17369960 acttgttgaaagtaagttactcttcgatgatttactt 17369996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 17370022 - 17370062
Alignment:
Q  198 gttttgatttgattatattgttgaatgattatctgttttat 238  Q
    ||||||||||||||  |||||||||||||||||| ||||||    
T  17370022 gttttgatttgattgcattgttgaatgattatctattttat 17370062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 1985818 - 1985617
Alignment:
Q  3 ttctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcgac 102  Q
    ||||||||||| ||| ||||||||||| | | | |||| |||||||||||| ||||| ||||| || |||||||||||| |||||||||||||||||||     
T  1985818 ttctctataataggagagataatagagtagaaagaattaaaagtaccaatagaattttgtggttcagtgccaagggatacgttgaaagcttggtatcgat 1985719  T
Q  103 ttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatg-gtacaatgtattttgtga-taatttcatatcatggtt 200  Q
    |||||||| |||||||| | |||||||||||||||||||||||||||||||| |||||||||  |||||| |||| ||||| || ||||| |||||||||    
T  1985718 ttcttgaaggtaagtttctcttcgatgatttacttgtttgaatttgtgttagtttgtgtatgtatacaatatattgtgtgattattttcaaatcatggtt 1985619  T
Q  201 tt 202  Q
    ||    
T  1985618 tt 1985617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 15571756 - 15571632
Alignment:
Q  8 tataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcgacttctt 107  Q
    |||||||||| | ||||||||| ||||| |||| |||||| ||| |||||  | ||||||| ||||| |||||||||||||||||||||||||||||| |    
T  15571756 tataattggagatataatagagtaaagagaattaaaagtaacaaaaaaatccgttggtccaatgccaggggatatgttgaaagcttggtatcgacttcct 15571657  T
Q  108 gaaagtaagtttttgttcgatgatt 132  Q
    |||||||||||||||||||||||||    
T  15571656 gaaagtaagtttttgttcgatgatt 15571632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 14076849 - 14077001
Alignment:
Q  1 aattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcg 100  Q
    |||| |||||||||||| ||||||||||| ||||| |||| ||| |||||||| ||||| |||||    | |||||   |||||||||||||||||||||    
T  14076849 aattatctataattggagagataatagagtaaagagaattaaaaataccaatagaattttgtggttgcattccaagaattatgttgaaagcttggtatcg 14076948  T
Q  101 acttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtta 153  Q
    |||| | |||||||||||  | ||||||||||||| ||||||||| |||||||    
T  14076949 acttttagaaagtaagttcctcttcgatgatttacatgtttgaatctgtgtta 14077001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 14386877 - 14387029
Alignment:
Q  1 aattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcg 100  Q
    |||| |||||||||||| ||||||||||| ||||| |||| ||| |||||||| ||||| |||||    | |||||   |||||||||||||||||||||    
T  14386877 aattatctataattggagagataatagagtaaagagaattaaaaataccaatagaattttgtggttgcattccaagaattatgttgaaagcttggtatcg 14386976  T
Q  101 acttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtta 153  Q
    |||| | |||||||||||  | ||||||||||||| ||||||||| |||||||    
T  14386977 acttttagaaagtaagttcctcttcgatgatttacatgtttgaatctgtgtta 14387029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 13416776 - 13416657
Alignment:
Q  1 aattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcg 100  Q
    ||||| ||| ||| ||| ||||||||||| ||||| |||| ||||| ||||| |||||||||||| |   ||||||||||||||||||||||||||||||    
T  13416776 aattcactacaataggagagataatagagtaaagagaattaaaagtcccaatcaaatttggtggttcgacgccaagggatatgttgaaagcttggtatcg 13416677  T
Q  101 acttcttgaaagtaagtttt 120  Q
    |||||  ||||||| |||||    
T  13416676 acttcaagaaagtatgtttt 13416657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 215
Target Start/End: Complemental strand, 18514618 - 18514468
Alignment:
Q  71 gccaagggatatgttgaaagcttggtatc----gacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatg-g 165  Q
    ||||||| ||||||||| |||||| ||||    ||||| | ||||||||||   |||||  ||||||||||||||||||||| ||||  | ||||  | |    
T  18514618 gccaaggcatatgttgagagcttgatatctacagacttgtggaaagtaagtccctgttccgtgatttacttgtttgaatttgagttaaatcgtgtccgtg 18514519  T
Q  166 tacaatgtattttgtgataattt-catatcatggttttgatttgattatat 215  Q
    ||||||||||  ||| || |||| |||||||||||||||||||||||||||    
T  18514518 tacaatgtatcgtgtcattattttcatatcatggttttgatttgattatat 18514468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 22064356 - 22064428
Alignment:
Q  80 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtt 152  Q
    |||| |||||| ||||| |||  || |||||||||||||| | | ||| ||||||||||||||||||||||||    
T  22064356 tatgatgaaaggttggtttcgtattgttgaaagtaagtttctttacgacgatttacttgtttgaatttgtgtt 22064428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 19350870 - 19350803
Alignment:
Q  80 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaattt 147  Q
    |||||||||||||| || || || |||||||||||||||| | ||  |||||||| ||||||||||||    
T  19350870 tatgttgaaagcttagtttcaacctcttgaaagtaagtttctctttaatgatttaattgtttgaattt 19350803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 19597475 - 19597401
Alignment:
Q  70 tgccaagggatatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaa 144  Q
    |||||| | |||||||||||||||||| ||||||  || ||||||||||| | ||| |  |||||||||||||||    
T  19597475 tgccaatgaatatgttgaaagcttggtttcgactaattaaaagtaagtttcttttcaacaatttacttgtttgaa 19597401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 22524978 - 22524940
Alignment:
Q  80 tatgttgaaagcttggtatcgacttcttgaaagtaagtt 118  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  22524978 tatgttgaaagcttggtttcaacttcttgaaagtaagtt 22524940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 18982738 - 18982666
Alignment:
Q  80 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtt 152  Q
    ||||||||||||||||| ||||||  |||||||||| ||| | ||| |  ||||||||| |||||||| ||||    
T  18982738 tatgttgaaagcttggtttcgactagttgaaagtaaatttcttttcaactatttacttgattgaatttttgtt 18982666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 7665 - 7887
Alignment:
Q  1 aattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcg 100  Q
    |||| ||||||||| || ||||||||||| ||| | |||| ||||||||||| |||||  ||||| || ||||||||||||||| |||||||||||| ||    
T  7665 aattgtctataatttgagagataatagagtaaatagaattaaaagtaccaatcaaattccgtggttcaatgccaagggatatgtagaaagcttggtaccg 7764  T
Q  101 acttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtga-taatttcatatcatggt 199  Q
    |||||||||| ||| | ||||| ||||| |||||||||||||||||| |||||| ||||     ||||| ||| || ||||| || |||||||| |||||    
T  7765 acttcttgaaggtatg-ttttgctcgatcatttacttgtttgaatttttgttagtttgt-----gtacattgtcttgtgtgattattttcatattatggt 7858  T
Q  200 tttgatttgattatattgttgaatgatta 228  Q
    |||||||||||||||||||| || |||||    
T  7859 tttgatttgattatattgttcaacgatta 7887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 53775101 - 53775174
Alignment:
Q  80 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtta 153  Q
    |||||||||||||||||||| || | |||||||||||||  | ||| | |||||||||||||||||||||||||    
T  53775101 tatgttgaaagcttggtatcaacgtgttgaaagtaagttcctcttccaagatttacttgtttgaatttgtgtta 53775174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 2911335 - 2911373
Alignment:
Q  80 tatgttgaaagcttggtatcgacttcttgaaagtaagtt 118  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  2911335 tatgtagaaagcttggtatcaacttcttgaaagtaagtt 2911373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 11970792 - 11970722
Alignment:
Q  80 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtg 150  Q
    ||||||||||||||||| | |  || |||||||||||||| | | |||  |||||||||||||||||||||    
T  11970792 tatgttgaaagcttggttttgtattgttgaaagtaagtttctctacgacaatttacttgtttgaatttgtg 11970722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 53775166 - 53775226
Alignment:
Q  176 tttgtgataatttcatatcatggttttgatttgattatattgttgaatgattatctgtttta 237  Q
    |||||| |||||| |||| || |||||||||||||| ||||||||||||||| ||| |||||    
T  53775166 tttgtgttaattt-atatgatagttttgatttgattgtattgttgaatgattctctctttta 53775226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 11981490 - 11981422
Alignment:
Q  83 gttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgt 151  Q
    |||||||||||||| |||  || |||||||||||||| | | | |  ||||||||||||||||||||||    
T  11981490 gttgaaagcttggtttcgtattgttgaaagtaagtttctctacaacaatttacttgtttgaatttgtgt 11981422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 18964701 - 18964561
Alignment:
Q  1 aattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcg 100  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||| |||   |||||  |  |||    || ||||||| ||||||||||||||| ||||     
T  18964701 aattctctataattggagagataatagagtaaagaaaattgaaaatacatgtaaaaaattttggaaggcttccaagggctatgttgaaagcttgatatct 18964602  T
Q  101 acttcttgaaagtaagtttttgttcgatgatttacttgttt 141  Q
    |||| |||||||||||||  | || ||||| ||||||||||    
T  18964601 acttgttgaaagtaagttcctctttgatgacttacttgttt 18964561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 18908577 - 18908517
Alignment:
Q  80 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtt 140  Q
    ||||||||||||||||| || || |||||||||||||||||| |||||||||||| |||||    
T  18908577 tatgttgaaagcttggtttcaacctcttgaaagtaagtttttcttcgatgatttaattgtt 18908517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 14515069 - 14515217
Alignment:
Q  1 aattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcg 100  Q
    |||||| || ||||||||||||||||||| ||||| |||  |||| ||||||| ||||   |||  ||  ||||||| |||||||||||| ||| |||||    
T  14515069 aattctttacaattggaaagataatagagtaaagagaatcaaaagcaccaatagaattacatggagcagggccaaggcatatgttgaaagtttgatatcg 14515168  T
Q  101 ac----ttcttgaaagtaagtttttgttcgatgatttacttgtttgaat 145  Q
    ||    || || ||||||||||  ||||| |||||||||||||||||||    
T  14515169 acagacttgttaaaagtaagttcctgttcaatgatttacttgtttgaat 14515217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 18913325 - 18913265
Alignment:
Q  80 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtt 140  Q
    |||||||||||||||||||| || |||||||||||||||| | ||| |||||||| |||||    
T  18913325 tatgttgaaagcttggtatcaacctcttgaaagtaagtttctcttcaatgatttaattgtt 18913265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 20712331 - 20712266
Alignment:
Q  80 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaattt 147  Q
    ||||| ||||||||||| || |||| |||||||||||||  | ||  |||||||||||||||||||||    
T  20712331 tatgtcgaaagcttggtttcaacttgttgaaagtaagttcctctt--atgatttacttgtttgaattt 20712266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 16170 - 16105
Alignment:
Q  80 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaattt 147  Q
    ||||| ||||||||||| || |||| |||||||||||||  | ||  |||||||||||||||||||||    
T  16170 tatgtcgaaagcttggtttcaacttgttgaaagtaagttcctctt--atgatttacttgtttgaattt 16105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 27618727 - 27618791
Alignment:
Q  80 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaa 144  Q
    ||||||||||||||||| || | ||||||||||||||||  | || || || |||||||||||||    
T  27618727 tatgttgaaagcttggtttcaatttcttgaaagtaagttcctatttgacgaattacttgtttgaa 27618791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University