View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4611_high_18 (Length: 309)
Name: NF4611_high_18
Description: NF4611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4611_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 33993573 - 33993272
Alignment:
| Q |
1 |
gtttcaaactcactgaacctgttgtagtctgtgagatcttctccatgaatgaatccatcgattcgcgaagtggatcaaaccatcttccagcatacactaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993573 |
gtttcaaactcactgaacctgttgtagtctgtgagatcttctccatgaatgaatccatcgattcgcgaagtggatcaaaccatcttccagcatacactaa |
33993474 |
T |
|
| Q |
101 |
ctctgcatatttaagtgctaatgagtctttaagctgaagtgtttcacgatcaagggtcaaagtctctaagtctcttgctgcagtgaagagaatggtgcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993473 |
ctctgcatatttaagtgctaatgagtctttaagctgaagtgtttcacgatcaagagtcaaagtctctaagtctcttgctgcagtgaagagaatggtgcca |
33993374 |
T |
|
| Q |
201 |
cctggagtttcgtaaactcctcggctcttcatgcctacaatgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcattcatct |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33993373 |
cctggagtttcgtaaactcctcggctcttcatgcctacaatgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcattcagct |
33993274 |
T |
|
| Q |
301 |
ca |
302 |
Q |
| |
|
|| |
|
|
| T |
33993273 |
ca |
33993272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 34000575 - 34000281
Alignment:
| Q |
1 |
gtttcaaactcactgaacctgttgtagtctgtgagatcttctccatgaatgaatccatcgattcgcgaagtggatcaaaccatcttccagcatacactaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||| |||||||||| |||||| || || ||||| ||||| ||||| ||||||||||||||||| |
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| T |
34000575 |
gtttcaaactcactgaacctgttgtaatctctgagatcttttccatgaatgcatccattgactcacgaagaggatcgaaccaccttccagcatacactaa |
34000476 |
T |
|
| Q |
101 |
ctctgcatatttaagtgctaatgagtctttaagctgaagtgtttcacgatcaagggtcaaagtctctaagtctcttgctgcagtgaagagaatggtgcca |
200 |
Q |
| |
|
||||||||| |||| |||||| ||||||||||||||||||||||||||||| || || ||| ||||||||||||||||||| ||||||| |||||||||| |
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|
| T |
34000475 |
ctctgcatacttaattgctaacgagtctttaagctgaagtgtttcacgatcgagtgttaaactctctaagtctcttgctgcggtgaagaaaatggtgcca |
34000376 |
T |
|
| Q |
201 |
cctggagtttcgtaaactcctcggctcttcatgcctacaatgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcatt |
295 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||| ||| |||||| | ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
34000375 |
cctggagtttcataaactcctcggctcttcaggcctacaatgtggttttcaactatatcgacacagcctattccatgccttccacctatctcatt |
34000281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 2 - 295
Target Start/End: Original strand, 18852396 - 18852689
Alignment:
| Q |
2 |
tttcaaactcactgaacctgttgtagtctgtgagatcttctccatgaatgaatccatcgattcgcgaagtggatcaaaccatcttccagcatacactaac |
101 |
Q |
| |
|
||||||| |||| ||||||||||| |||| || ||||||| ||| || | |||||| ||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
18852396 |
tttcaaagtcacagaacctgttgtggtctctgtaatcttctgcataaaggcatccatggattcgcgaagtggatcaaaccatcttccggcatacactaac |
18852495 |
T |
|
| Q |
102 |
tctgcatatttaagtgctaatgagtctttaagctgaagtgtttcacgatcaagggtcaaagtctctaagtctcttgctgcagtgaagagaatggtgccac |
201 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||| | |||||| |||||||| ||||||| ||| || || | ||| |||| || || || || |||| |
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|
| T |
18852496 |
tctgcatatttaagtgctaatgaatctttgacctgtattgtttctcgatcaagtgtcaaagactccaactcccgtgcggcagcaaaaaggatagttccac |
18852595 |
T |
|
| Q |
202 |
ctggagtttcgtaaactcctcggctcttcatgcctacaatgcggtcttcaaccaagtcgacacggcctattccatgccttccacctatctcatt |
295 |
Q |
| |
|
| || |||||||||||||| ||||| ||||||||||||| || | ||||||| ||||| ||||| ||||| |||||||||||||||||||| |
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|
| T |
18852596 |
caggtgtttcgtaaactccgcggcttttcatgcctacaagccgattctcaaccatgtcgatccggccaattccgtgccttccacctatctcatt |
18852689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 54 - 295
Target Start/End: Original strand, 42865559 - 42865800
Alignment:
| Q |
54 |
tccatcgattcgcgaagtggatcaaaccatcttccagcatacactaactctgcatatttaagtgctaatgagtctttaagctgaagtgtttcacgatcaa |
153 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| | ||| | |||||| ||||||| |
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| T |
42865559 |
tccatcgactcacgaagtggatcaaaccatctaccagcatacactaactctgcatatttaagggctaatgtatctttcacctgtattgtttctcgatcaa |
42865658 |
T |
|
| Q |
154 |
gggtcaaagtctctaagtctcttgctgcagtgaagagaatggtgccacctggagtttcgtaaactcctcggctcttcatgcctacaatgcggtcttcaac |
253 |
Q |
| |
|
| ||||||| ||| || || | |||||| | ||||| || || ||||| |||||||| |||||||| ||||||||||||||||||| | | ||||| |
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|
| T |
42865659 |
gtgtcaaagactccaactcccgtgctgctttaaagaggatagtcccaccaggagtttcataaactccacggctcttcatgcctacaagcctattctcaac |
42865758 |
T |
|
| Q |
254 |
caagtcgacacggcctattccatgccttccacctatctcatt |
295 |
Q |
| |
|
|| ||||| ||||| ||||| ||| |||||||||||||||| |
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|
| T |
42865759 |
catgtcgatccggccaattccgtgctttccacctatctcatt |
42865800 |
T |
|
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