View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4611_high_19 (Length: 307)
Name: NF4611_high_19
Description: NF4611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4611_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 40 - 276
Target Start/End: Original strand, 17613628 - 17613862
Alignment:
| Q |
40 |
gatgacggtgtctttacgccttaatttcattgctaacagacatatatcatgcagaacctagtgtacagggattgatatctatgtatgtactacttgagga |
139 |
Q |
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| T |
17613628 |
gatgatggtgtctttacgccttaatttcagtgctaacggacatatatcacgcagaacctagtgtacagggattgatatctatgtatgtac--cttgagga |
17613725 |
T |
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| Q |
140 |
aaggttcacttgttgtgatatatattgtgaagccatgttgaatgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgccatcact |
239 |
Q |
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| T |
17613726 |
aagattcacttgttgtgatatatattttgaagccatgttgaatgtttgtaaattagaagatgcccaggttggccaattagaagaaaaatgtgtcatcac- |
17613824 |
T |
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| Q |
240 |
ttgtggcaacttcttaccc-tttttcctcaattctctc |
276 |
Q |
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| T |
17613825 |
ttgtggcaacttctgacccttttttcctcaattctctc |
17613862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 40 - 275
Target Start/End: Original strand, 17693361 - 17693592
Alignment:
| Q |
40 |
gatgacggtgtctttacgccttaatttcattgctaacagacatatatcatgcagaacctagtgtacagggattgatatctatgtatgtactacttgagga |
139 |
Q |
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| T |
17693361 |
gatgatggtgtctttatgccttaatttcagtgctaacgggcgtctatcatgcagaacttagtgtacagggtttgatatctat-tatgtac--cttgagga |
17693457 |
T |
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| Q |
140 |
aaggttcacttgttgtgatatatattgtgaagccatgttgaatgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgccatcact |
239 |
Q |
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| T |
17693458 |
aaggttcacttgttgtgatatatattgtgaagccatgttgaatgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgtcatcac- |
17693556 |
T |
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| Q |
240 |
ttgtggcaacttcttaccctttttcctcaattctct |
275 |
Q |
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| T |
17693557 |
ttgtggcaacttcagaccctttttcctcaattctct |
17693592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 17671209 - 17671324
Alignment:
| Q |
40 |
gatgacggtgtctttacgccttaatttcattgctaacagacatatatcatgcagaacctagtgtacagggattgatatctatgtatgtactacttgagga |
139 |
Q |
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| T |
17671209 |
gatgatggtgtcttttcgccttagtttcagtgctaacggacatctatcatgcagaacctagtgtacagggattgatatctatgtatgtaccacttgatga |
17671308 |
T |
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| Q |
140 |
aaggttcacttgttgt |
155 |
Q |
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| T |
17671309 |
atggttcacttgttgt |
17671324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 17671327 - 17671422
Alignment:
| Q |
181 |
atgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgccatcactttgtggcaacttcttaccc-tttttcctcaattctctc |
276 |
Q |
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| T |
17671327 |
atgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgtcatcac-ttgtggcaacttctgacccttttttcctcaattctctc |
17671422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 17657819 - 17657914
Alignment:
| Q |
181 |
atgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgccatcactttgtggcaacttcttaccct-ttttcctcaattctctc |
276 |
Q |
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| T |
17657819 |
atgtttgtaaattagaagatgctcaggtttgcaaattagaagaaaaatgtgtcatcac-ttgtggcaacttctgaccctattttcctcaattctctc |
17657914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 17657758 - 17657816
Alignment:
| Q |
97 |
ctagtgtacagggattgatatctatgtatgtactacttgaggaaaggttcacttgttgt |
155 |
Q |
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| T |
17657758 |
ctagtgtacaggaattgatatctatgtatgtaccacttgatgaatggttcacttgttgt |
17657816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 17613540 - 17613569
Alignment:
| Q |
6 |
tatggtgcttgtgaagagtgacctaacctt |
35 |
Q |
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| T |
17613540 |
tatggtgcttgtgaagagtgacctaacctt |
17613569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 17626725 - 17626754
Alignment:
| Q |
6 |
tatggtgcttgtgaagagtgacctaacctt |
35 |
Q |
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| T |
17626725 |
tatggtgcttgtgaagagtgacctaacctt |
17626754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 17671121 - 17671150
Alignment:
| Q |
6 |
tatggtgcttgtgaagagtgacctaacctt |
35 |
Q |
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| T |
17671121 |
tatggtgcttgtgaagagtgacctaacctt |
17671150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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