View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4611_high_1_N (Length: 1131)
Name: NF4611_high_1_N
Description: NF4611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4611_high_1_N |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 11833782 - 11834252
Alignment:
| Q |
1 |
aaacatatctagaacaagcaaccagaaaacataaattaatcaattatagatcacaaaaataacattcagagtcctaattagcaactaaaaattgaataac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |
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| T |
11833782 |
aaacatatctagaacaagcaaccagaaaacataaattaat----tatagatcacaaaaataacattcacagtcctaattagcaactgaaaattgattaac |
11833877 |
T |
|
| Q |
101 |
aactaaaaataaggttacaacatttcattggattggataacgaattttaaaaagaaaatttcaacattcatatgcacattgcagtctttcttggacatgt |
200 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||| |
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| T |
11833878 |
aactaaaaataaggttacgacatttcattggactggataccgaattttaaaaagaaagtttcaacattcacatgcacattgcaatctttcttggacatgt |
11833977 |
T |
|
| Q |
201 |
tcgatgaaacttgaaatgtgttataattaaccgagtaacacgttttaacacttgtaaacacaacgtgtgatgtgattacatgcagtcacacacatcagaa |
300 |
Q |
| |
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|||||||||||||| ||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11833978 |
ccgatgaaacttgaagtgtgttataattagtcgagtgacacgttttaacacttctaaacacaacgtgtgatgtgattacatgcaatcacacacatcagaa |
11834077 |
T |
|
| Q |
301 |
cggtctaatatttatcattagatcgtgatcggagtgttcaaatgtgaacttgcatgcaacccaaatccacctatggtttaccataaagccactagggtgg |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11834078 |
cggtctaatatttatcattagatcgtgatcggagggttcaaatgtgaacttgcatacaacccaaatccacctatggtttaccataaagccactagggtgg |
11834177 |
T |
|
| Q |
401 |
actccactatcaatttccgaaagtgatttttcacttttcacaaacaccaaacaacaccttacactactactagta |
475 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11834178 |
actccactatcaatttccgaaagtgatttttcacttttctcaaacaccaaacaacaccttacactactactagta |
11834252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 736 - 1104
Target Start/End: Original strand, 11834512 - 11834880
Alignment:
| Q |
736 |
attaaacccttcactcaaaatcaaaacccattttcttatcaacaaaaagataagatttttacaacaattctaacaaaattcaaaatgggttttggagttt |
835 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11834512 |
attaaacccttcactcaaaatcaaaacccattttcatatcaacaaaaagataagatttttacaacaattctaacaaaattcaaaatgggttttggagttt |
11834611 |
T |
|
| Q |
836 |
ccatcaatcttcaccttgttttgctcttttccatgatctttgtttctgcatggtcacaagatgatgctgcaatgcaaaagctgaaaacttcaatcaaatc |
935 |
Q |
| |
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| T |
11834612 |
ccatcaatcttcaccttgttttgctcttttccatgatctttgtttctgcatggtcacaagatgatgctgcaatgcaaaagctgaaaacttcaatcaaatc |
11834711 |
T |
|
| Q |
936 |
atcaagcagtaatcttgattggtcaaactcagattattgcaaatgggagaaagttacttgtaatggaaatcgtgtcactgcaattcaaattgcagataca |
1035 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11834712 |
atcaagcagtaatcttgattggtcaaactcagattattgcaaatgggagaaagttacctgtaatggaaatcgtgtcactgcaattcaaattgcagataca |
11834811 |
T |
|
| Q |
1036 |
aacattcaaggttctttaccaaaagaattaatgcaactcactgagttaactcggtttgaatgcaatgga |
1104 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11834812 |
aacattcaaggttctttaccaaaagaattgatgcaactcactgagttaactcggtttgaatgcaatgga |
11834880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 8e-61
Query Start/End: Original strand, 537 - 660
Target Start/End: Original strand, 11834313 - 11834436
Alignment:
| Q |
537 |
gccgtgtatcaaattccaataaattcataccataaaagcgttttttctttctctttcactttattcccttttagtagaatccttatcacaagtcacaaca |
636 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11834313 |
gccgtgtatcaaattccaataaattcataccataaaagcgttttttctttctctttcactttattcccttttagtagaatccttatcacaagtcacaacc |
11834412 |
T |
|
| Q |
637 |
gcgtaagtgattactgattaagcg |
660 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
11834413 |
gcgtaagtgattactgattaagcg |
11834436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 843 - 1104
Target Start/End: Complemental strand, 11859145 - 11858884
Alignment:
| Q |
843 |
tcttcaccttgttttgctcttttccatgatctttgtttctgcatggtcacaagatgatgctgcaatgcaaaagctgaaaacttcaatcaaatcatcaagc |
942 |
Q |
| |
|
||||||||||||| || | ||||| ||||| ||||||||||||||||| |||||||||| || |||||||||||||||| ||| || |||||||||||| |
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|
| T |
11859145 |
tcttcaccttgttgtgttgttttctatgatgtttgtttctgcatggtctcaagatgatgttgttatgcaaaagctgaaaagttctataaaatcatcaagc |
11859046 |
T |
|
| Q |
943 |
agtaatcttgattggtcaaactcagattattgcaaatgggagaaagttacttgtaatggaaatcgtgtcactgcaattcaaattgcagatacaaacattc |
1042 |
Q |
| |
|
| | |||||||||||||| ||||||||| | |||||||| | ||| ||||||||| |||||||||||||||||||||| | || |||| |
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|
| T |
11859045 |
aatgatcttgattggtcagactcagattttcgcaaatggaatcgtgttcagattaatggaaacacagtcactgcaattcaaattgcaggtctgaatattc |
11858946 |
T |
|
| Q |
1043 |
aaggttctttaccaaaagaattaatgcaactcactgagttaactcggtttgaatgcaatgga |
1104 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |||||| ||| ||||| ||||||||| |
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|
| T |
11858945 |
aaggttctttaccaaaagaattggtgcaactcactcagttaaatcgttttgagtgcaatgga |
11858884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 816 - 981
Target Start/End: Original strand, 11847978 - 11848143
Alignment:
| Q |
816 |
caaaatgggttttggagtttccatcaatcttcaccttgttttgctcttttccatgatctttgtttctgcatggtcacaagatgatgctgcaatgcaaaag |
915 |
Q |
| |
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||||||| |||||||||||||| ||||||||||||||| || |||| ||||| ||| || |||||||||| |||||||| | || ||||||||| |
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| T |
11847978 |
caaaatgagttttggagtttcctatgttcttcaccttgttttactgttttttatgatgtttattgctgcatggtctcaagatgacgttgttatgcaaaag |
11848077 |
T |
|
| Q |
916 |
ctgaaaacttcaatcaaatcatcaagcagtaatcttgattggtcaaactcagattattgcaaatgg |
981 |
Q |
| |
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||||||| ||| || | ||||||||||| | |||||||||||||| || ||||| |||||||||| |
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|
| T |
11848078 |
ctgaaaagttctataacatcatcaagcaatgatcttgattggtcagacaaagattgttgcaaatgg |
11848143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1039 - 1088
Target Start/End: Original strand, 11848201 - 11848250
Alignment:
| Q |
1039 |
attcaaggttctttaccaaaagaattaatgcaactcactgagttaactcg |
1088 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
11848201 |
attcaaggttctttaccaaaagaattaatgcaactcactgctttaactcg |
11848250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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