View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4611_high_2 (Length: 558)
Name: NF4611_high_2
Description: NF4611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4611_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 6e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 341 - 534
Target Start/End: Complemental strand, 11452079 - 11451886
Alignment:
| Q |
341 |
caacttaagattaaaggctgtttggtatcagacacctacacgacaccgatagatgtagtgattgtttgtttccatgatggtgtcgtaccattgaccaaaa |
440 |
Q |
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| T |
11452079 |
caacttaagattaaaggctgtttggtatcaaacacctacacgacaccgatagatgtagtgattgtttgtttccatgacggggtcataccattgaccaaaa |
11451980 |
T |
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| Q |
441 |
actaggatttatagctttttaaaatcacgatggagacacattgacgactcttgatattgtggataaccgcggtcaaattcgatgtagctgatga |
534 |
Q |
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| T |
11451979 |
actaggatttatagccttttaaaatcacggtggagacacattgacgactcttgatattgtggataaccgcggtcaaattcgatgtagctgatga |
11451886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 11452396 - 11452286
Alignment:
| Q |
23 |
catcatcaaagcctacgcacttcctcttcttctcttctctgctgccatgttctaccagctttttcttattcccaatgcttttcctccttctcattatgat |
122 |
Q |
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| T |
11452396 |
catcatcaaagcctacgcacttcctcttcttctcttctctgctgccatgttctaccagctttttcttattcccaatgcttttcctccttctcattatgat |
11452297 |
T |
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| Q |
123 |
ggtaactagta |
133 |
Q |
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| T |
11452296 |
ggtaactagta |
11452286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 196 - 274
Target Start/End: Complemental strand, 11452224 - 11452146
Alignment:
| Q |
196 |
aatgcagttctgagaattaagatgtatagttcgattgatgaagtgaaggaggcttatgtcaatcttgaatctaaatggt |
274 |
Q |
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| T |
11452224 |
aatgcagttctgagaattaagatgtatagttcgattgatgaagtgaaggaagcttatgtcaatcttgaatctaaatggt |
11452146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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