View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4611_high_5 (Length: 462)
Name: NF4611_high_5
Description: NF4611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4611_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 37136079 - 37135617
Alignment:
| Q |
1 |
cggagaaattatttggaacactgccgttgtaattgggaatcacggcaatataattggcatacacaggaaggtaaatttcctaaactttctactttcactt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37136079 |
cggagaaattatttggaacactgccgttgtaattgggaatcacggcaatataattggcatacacaggaaggtaaatttcctaaactttctactttcactt |
37135980 |
T |
|
| Q |
101 |
ctaatggaatagcccgtgtttctgctatctaatgaacacacaacatttgtcagaaccatgtaacaagagttggagactttactgagagcacatattatat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37135979 |
ctaatggaatagcccgtgtttctgctatctaatgaacacacaacatttgtcagaaccatgtaacaagagttggagactttactgagagcacatattatat |
37135880 |
T |
|
| Q |
201 |
ggaaggaaatacaggtcacccagtatttgaaacagaatttggaaagattgccattaatatatgttatggtaggcaccatcctttgaactgtttaactttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37135879 |
ggaaggaaatacaggtcacccagtatttgaaacagaatttggaaagattgccattaatatatgttatggtaggcaccatcctttgaactgtttaactttt |
37135780 |
T |
|
| Q |
301 |
ggcttgaatggcgccgaaattgttttcaacccttgtgccactgttggtggactcactgaagcaatgtggccaatagaggtcagttgttttatattgatgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37135779 |
ggcttgaatggcgccgaaattgttttcaacccttgtgccactgttggtggactcactgaagcaatgtggccaatagaggtcagttgttttatattgatgg |
37135680 |
T |
|
| Q |
401 |
aagacatgttaaactcttatctgg--tttcttaatgtttataacattattcgatgctaataca |
461 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37135679 |
aagacatgttaaactcttatctggtatttcttaatgtttataacattattcgatgctaataca |
37135617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 416
Target Start/End: Complemental strand, 37140010 - 37139603
Alignment:
| Q |
9 |
ttatttggaacactgccgttgtaattgggaatcacggcaatataattggcatacacaggaaggtaaatttcctaaactttctactttcacttctaatgga |
108 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||| |
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| T |
37140010 |
ttatgtggaacactgccgtcgtaattgggaatcacggcaatataattggaatacacaggaaggtaaatttcctaaactttctacctcctcttctaatgga |
37139911 |
T |
|
| Q |
109 |
atagcccgtgtttctgctatctaa-tgaacacacaacatttgtcagaaccatgtaacaagagttggagactttactgagagcacatattatatggaagga |
207 |
Q |
| |
|
||| ||||| |||| ||||||||| ||||||||||||||||| ||||||||| || |||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
37139910 |
ata-cccgtctttcagctatctaaatgaacacacaacatttgacagaaccatataccaagagttggagacttcaatgagagcacatattatatggaagga |
37139812 |
T |
|
| Q |
208 |
aatacaggtcacccagtatttgaaacagaatttggaaagattgccattaatatatgttatggtaggcaccatcctttgaactgtttaacttttggcttga |
307 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |||||||||| | |
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| T |
37139811 |
aatactggtcaccctgtatttgaaacagaatttggaaagattgccattaatatatgttatggtaggcaccatcctttaaattggttagcttttggcttaa |
37139712 |
T |
|
| Q |
308 |
atggcgccgaaattgttttcaacccttgtgccactgttggtggactcactgaagcaatgtggccaatagaggtcagttgttttatattgatggaagacat |
407 |
Q |
| |
|
|||| || |||||||||||||||||| |||||| ||||| | ||||| |||| | ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37139711 |
atggtgcggaaattgttttcaaccctgctgccaccgttggagaactcagtgaacctatgtggccaatagaggttcgttgttttatattgatggaagacat |
37139612 |
T |
|
| Q |
408 |
gttaaactc |
416 |
Q |
| |
|
|||| |||| |
|
|
| T |
37139611 |
gttagactc |
37139603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 9 - 441
Target Start/End: Complemental strand, 12077512 - 12077080
Alignment:
| Q |
9 |
ttatttggaacactgccgttgtaattgggaatcacggcaatataattggcatacacaggaaggtaaatttcctaaactttctactttcacttctaatgga |
108 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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|
| T |
12077512 |
ttatttggaacactgccgttgtgattgggaatcacgacaatataattgggatacacaggaaggtaaattctctaaactttctacttccacttctaatgga |
12077413 |
T |
|
| Q |
109 |
atagcccgtgtttctgctatctaatgaacacacaacatttgtcagaaccatgtaacaagagttggagactttactgagagcacatattatatggaaggaa |
208 |
Q |
| |
|
|||| |||| |||| ||||||| || |||| |||| | || || |||||| |||||||||| ||||||| |||||||| ||||||||||||||||||| |
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|
| T |
12077412 |
atagaccgtctttcagctatctgataaacatacaaaaatttgcacaaccatctaacaagagtcagagacttcactgagagtacatattatatggaaggaa |
12077313 |
T |
|
| Q |
209 |
atacaggtcacccagtatttgaaacagaatttggaaagattgccattaatatatgttatggtaggcaccatcctttgaactgtttaacttttggcttgaa |
308 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||| |
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|
| T |
12077312 |
atacaggtcaccctgtatttgaaacagaatttggaaagattgccatta--atatgttatggtagacaccatcctttaaactgttaaacttttggcttgaa |
12077215 |
T |
|
| Q |
309 |
tggcgccgaaattgttttcaacccttgtgccactgttggtggactcactgaagcaatgtggccaatagaggtcagttgttttatattgatggaagacatg |
408 |
Q |
| |
|
|| || |||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12077214 |
tgacgacgaaattgttctcaacccttgtgccactgttggtgaactcactgaagcaatatggccaatagaggtcagttgttttatattgatggaagacatg |
12077115 |
T |
|
| Q |
409 |
ttaaactcttatctgg--tttcttaatgtttataa |
441 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| |
|
|
| T |
12077114 |
ttaaactcttatatggtatttcttaatgtttataa |
12077080 |
T |
|
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