View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4611_high_7 (Length: 373)
Name: NF4611_high_7
Description: NF4611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4611_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 47117118 - 47116840
Alignment:
| Q |
1 |
ccggcgaagatggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaaaataatcgtt |
100 |
Q |
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| T |
47117118 |
ccggtgaagacggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaaaataatcgtt |
47117019 |
T |
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| Q |
101 |
aaaaggtgatcgatcgagtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaac |
200 |
Q |
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| T |
47117018 |
aaaaggtgatcga----gtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaac |
47116923 |
T |
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| Q |
201 |
taaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaac |
283 |
Q |
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| T |
47116922 |
taaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaac |
47116840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 47116811 - 47116765
Alignment:
| Q |
313 |
gaaatgaaataacaagggtatgaggaagcttggagtggtgtccatct |
359 |
Q |
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| T |
47116811 |
gaaatgaaataacaagggtatgaggaagcttggagtggtgtccatct |
47116765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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