View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4611_low_1 (Length: 296)
Name: NF4611_low_1
Description: NF4611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4611_low_1 |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 37135618 - 37135897
Alignment:
| Q |
19 |
gtattagcatcgaataatgttataaacattaagaaa--ccagataagagtttaacatgtcttccatcaatataaaacaactgacctctattggccacatt |
116 |
Q |
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| T |
37135618 |
gtattagcatcgaataatgttataaacattaagaaataccagataagagtttaacatgtcttccatcaatataaaacaactgacctctattggccacatt |
37135717 |
T |
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| Q |
117 |
gcttcagtgagtccaccaacagtggcacaagggttgaaaacaatttcggcgccattcaagccaaaagttaaacagttcaaaggatggtgcctaccataac |
216 |
Q |
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| T |
37135718 |
gcttcagtgagtccaccaacagtggcacaagggttgaaaacaatttcggcgccattcaagccaaaagttaaacagttcaaaggatggtgcctaccataac |
37135817 |
T |
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| Q |
217 |
atatattaatggcaatctttccaaattctgtttcaaatactgggtgacctgtatttccttccatataatatgtgctctca |
296 |
Q |
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| T |
37135818 |
atatattaatggcaatctttccaaattctgtttcaaatactgggtgacctgtatttccttccatataatatgtgctctca |
37135897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 63 - 296
Target Start/End: Original strand, 37139603 - 37139836
Alignment:
| Q |
63 |
gagtttaacatgtcttccatcaatataaaacaactgacctctattggccacattgcttcagtgagtccaccaacagtggcacaagggttgaaaacaattt |
162 |
Q |
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| T |
37139603 |
gagtctaacatgtcttccatcaatataaaacaacgaacctctattggccacataggttcactgagttctccaacggtggcagcagggttgaaaacaattt |
37139702 |
T |
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| Q |
163 |
cggcgccattcaagccaaaagttaaacagttcaaaggatggtgcctaccataacatatattaatggcaatctttccaaattctgtttcaaatactgggtg |
262 |
Q |
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| T |
37139703 |
ccgcaccatttaagccaaaagctaaccaatttaaaggatggtgcctaccataacatatattaatggcaatctttccaaattctgtttcaaatacagggtg |
37139802 |
T |
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| Q |
263 |
acctgtatttccttccatataatatgtgctctca |
296 |
Q |
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| T |
37139803 |
accagtatttccttccatataatatgtgctctca |
37139836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 38 - 296
Target Start/End: Original strand, 12077080 - 12077338
Alignment:
| Q |
38 |
ttataaacattaagaaa--ccagataagagtttaacatgtcttccatcaatataaaacaactgacctctattggccacattgcttcagtgagtccaccaa |
135 |
Q |
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| T |
12077080 |
ttataaacattaagaaataccatataagagtttaacatgtcttccatcaatataaaacaactgacctctattggccatattgcttcagtgagttcaccaa |
12077179 |
T |
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| Q |
136 |
cagtggcacaagggttgaaaacaatttcggcgccattcaagccaaaagttaaacagttcaaaggatggtgcctaccataacatatattaatggcaatctt |
235 |
Q |
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| T |
12077180 |
cagtggcacaagggttgagaacaatttcgtcgtcattcaagccaaaagtttaacagtttaaaggatggtgtctaccataac--atattaatggcaatctt |
12077277 |
T |
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| Q |
236 |
tccaaattctgtttcaaatactgggtgacctgtatttccttccatataatatgtgctctca |
296 |
Q |
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| T |
12077278 |
tccaaattctgtttcaaatacagggtgacctgtatttccttccatataatatgtactctca |
12077338 |
T |
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