View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4612-Insertion-1 (Length: 581)
Name: NF4612-Insertion-1
Description: NF4612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4612-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 6 - 472
Target Start/End: Original strand, 6633656 - 6634124
Alignment:
| Q |
6 |
cacaaacatgtctatatatacttcctctccccagttttcaaatcaccttaattattttcacctccagcttcagcttcagcttcagaggctgaaacatttg |
105 |
Q |
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| T |
6633656 |
cacaaacatgtctatatatacttcctctccccagttttcaaatcaccttaattattttcacctccagcttcagcttcagcttcagaggctgaaacatttg |
6633755 |
T |
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| Q |
106 |
tgttttcgacgacttcttccttagccgaagtctcttcctgtgcaaccacatcctctgcacacatacaaaaccaaattaatattcataatcaaagttcata |
205 |
Q |
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| T |
6633756 |
tgttttcgacaacttcttccttagccgaagtctcttcctgtgcaaccacatcctctgcacacatacaaaaccaaattaatattcataatcaaagttcata |
6633855 |
T |
|
| Q |
206 |
tgatacatgacaactttgaagaaagttccatgcatgatgcac--nnnnnnnnnnnngtaaatagtcctaatttatctcaagaaaactctattggtttatt |
303 |
Q |
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| T |
6633856 |
tgatacatgacaactttgaagaaagttccatgcatgatgcacaaaaaaaaaaaaaagtaaataatcctaatttatctcaagaaaactctattggtttatt |
6633955 |
T |
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| Q |
304 |
atgcacacctttttcattttcttcggccaattttttctcttcttcagtaccagcagcatcatcagcattgattttctcgtcattctttatcgatgcatgt |
403 |
Q |
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| T |
6633956 |
atgcacacttttttcattttcttcggccaattttttctcttcttcagtatcagcagcaccatcagcattgattttctcgtcattctttatcgatgcatgg |
6634055 |
T |
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| Q |
404 |
tcatcttttttctcaacttcagcagaaggttcctccacaacatcattctccttcttttcttcatcattt |
472 |
Q |
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| T |
6634056 |
tcatcttttttctcaacttcagcagaaggttcctccacaacatcctcctctttctttccttcatcattt |
6634124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 464 - 581
Target Start/End: Original strand, 6634056 - 6634173
Alignment:
| Q |
464 |
tcatcatttttctcaatttctttagaaggttcctccacaacatcctcctctttctttccttcatcatttattttctccatagcttcactgtctttaacat |
563 |
Q |
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||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6634056 |
tcatcttttttctcaacttcagcagaaggttcctccacaacatcctcctctttctttccttcatcatttattttctccatagcttcaccgtctttaacat |
6634155 |
T |
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| Q |
564 |
ccttagctgcatcgtcct |
581 |
Q |
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| T |
6634156 |
ccttagctgcatcgtcct |
6634173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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