View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4612_high_10 (Length: 346)
Name: NF4612_high_10
Description: NF4612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4612_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 2 - 335
Target Start/End: Original strand, 24203187 - 24203512
Alignment:
| Q |
2 |
aaagtacagtcccaactcttgcgatctttttgccgggccacattttctccatcctgtaagatctcatgagatccatgtgagggatattatcaacttgaag |
101 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24203187 |
aaagtacagtcccaactcttgcgatctttttgtcgggcctcattttctccatcctgtaagatctcatgagatccatgtgagggatattatcaactcgaag |
24203286 |
T |
|
| Q |
102 |
aagttatttgagtatgcagtcatcaccttgcaagccagtttgtaaggtttgggttagacccaacctaaattctaggtgttacctactaaactggaatatc |
201 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| || || | ||||||||||| |
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| T |
24203287 |
aagttatttgagtacgcagtcatcaccttgcaagccagtttgtaagggctgagttagacccaacctaaattctaagtattcc-------actggaatatc |
24203379 |
T |
|
| Q |
202 |
ttttcttgacttacaccgctttgaatttaatgactttgtccttgaagtattcttcaagagtttataggttggttcttgtccttgaatttataccttacat |
301 |
Q |
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|||| |||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24203380 |
ttttgttgacttaaaccagtttgaatttaatgac-ttgtccttgaagtattctgcaagagtttataggttggttcttgtccttgaatttataccatacat |
24203478 |
T |
|
| Q |
302 |
actttttaagcattaaggtttattggttcctttg |
335 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
24203479 |
actttttaagcattaaggtttattggttcctttg |
24203512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 140 - 321
Target Start/End: Complemental strand, 29409987 - 29409796
Alignment:
| Q |
140 |
tttgtaaggtttgggttagacccaacctaaattctaggtgttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt-- |
237 |
Q |
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| T |
29409987 |
tttgtaagggttgagttaggcccaccctaaattctaagagttaattgctaaactggaatatcttttattgacatacacctctttgaatttaatgacttca |
29409888 |
T |
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| Q |
238 |
-------tg-tccttgaagtattcttcaagagtttataggttggttcttgtccttgaatttataccttacatactttttaagcattaaggtt |
321 |
Q |
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|| | ||| | ||| || |||||||||||||| |||||||||||||||| | |||| ||||||||||||||||||||||||| |
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| T |
29409887 |
caaatcgtgttggttggaatatactgcaagagtttataggcgggttcttgtccttgaactagtaccatacatactttttaagcattaaggtt |
29409796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 27560418 - 27560361
Alignment:
| Q |
278 |
tgtccttgaatttataccttacatactttttaagcattaaggtttattggttcctttg |
335 |
Q |
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| T |
27560418 |
tgtccttgaattaataccatacatactttttaagcattaaggtttattgattcctttg |
27560361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 27560486 - 27560428
Alignment:
| Q |
179 |
gttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt |
237 |
Q |
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||||||||||||||| ||||| ||||| |||| ||||||| ||||||||| |||||||| |
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| T |
27560486 |
gttacctactaaacttgaataccttttgttgatttacacctctttgaattgaatgactt |
27560428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 27560841 - 27560771
Alignment:
| Q |
13 |
ccaactcttgcgatctttttgccgggccacattttctccatcctgtaagatctcatgagatccatgtgagg |
83 |
Q |
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||||||||| | |||||||| ||||||| | ||||| ||||| |||||| ||||||| ||||||||||||| |
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| T |
27560841 |
ccaactcttacaatctttttcccgggcctcgttttcgccatcttgtaaggtctcatgcgatccatgtgagg |
27560771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 36668010 - 36667952
Alignment:
| Q |
179 |
gttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt |
237 |
Q |
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||||||||||||||||||||| ||| | || ||||||| |||||||||||||||||| |
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| T |
36668010 |
gttacctactaaactggaatactgtttgtcgatttacacctctttgaatttaatgactt |
36667952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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