View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4612_high_12 (Length: 331)
Name: NF4612_high_12
Description: NF4612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4612_high_12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 124 - 331
Target Start/End: Original strand, 5051458 - 5051669
Alignment:
| Q |
124 |
tgaaaatccaacaattctcgaatataaggatgattt-atcttgttatattgctgagtttaaggtcgaattttcagcccagaaaactctaggaaatttggt |
222 |
Q |
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| T |
5051458 |
tgaaaatccaacaattctcgaatataaggatgattttatcttgttatattgtcgagtttagggtcgaattttcagcccagaaaactctaggaaatttggt |
5051557 |
T |
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| Q |
223 |
ttgcaggagtagaaagatggagattggatgacaacgatacgaggagtttatgctttgagataaaattgaagtgctacttttctggtt---ttcttctttc |
319 |
Q |
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| T |
5051558 |
ttgcaggagtagaaagatggagattggatgagaaccatacgaggagtttacgctttgagataaaattgaagtgctacttttctggttttcttcttctttc |
5051657 |
T |
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| Q |
320 |
atttgttggacc |
331 |
Q |
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| T |
5051658 |
atttgttggacc |
5051669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 5051391 - 5051458
Alignment:
| Q |
1 |
cgtttatttctgaccggtttccagctatggagggagtggaagtttgatccaatctttcgtgaggatgt |
68 |
Q |
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| T |
5051391 |
cgtttatttctgaccggtttccagctatggagggagtggaagtttgatccaatctttcgcgaggatgt |
5051458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 51274023 - 51273699
Alignment:
| Q |
11 |
tgaccggtttccagctatggagggagtggaagtttgatccaatctttcgtgaggatgttgcatacatggtagactctaccatgtatggttttcttgcaga |
110 |
Q |
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| T |
51274023 |
tgaccggttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgttgcatacatggtagactctaccacgtgtggttttcttgcaga |
51273924 |
T |
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| Q |
111 |
gaatcaagccatttgaaaatccaacaattctcgaatataag-gatg-atttatcttgttatattgctgagtttaaggtcgaattttcagcccagaaaact |
208 |
Q |
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| T |
51273923 |
gaaacaagccatttgaaaatccgacaattctcgaatataagacatgtttttttcttgttatattgtcaagtttaggatcgaattttcggccaagaaaaca |
51273824 |
T |
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| Q |
209 |
ctaggaaatttggtttgcaggagtagaaagatggagattggatgacaacgatacgaggagtttatgctttgagataaaattgaagtgcta-cttttctgg |
307 |
Q |
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| T |
51273823 |
caatgaaatttgattttcaggagtagaaagattgagatttggtgagaacgaaatgagaagtttacgctttgagataaaattgaagtgccattttttctgg |
51273724 |
T |
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| Q |
308 |
ttttc---ttctttcatttgttgga |
329 |
Q |
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| T |
51273723 |
ttttcttgttctttcatttgttgga |
51273699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 28 - 259
Target Start/End: Complemental strand, 14908035 - 14907802
Alignment:
| Q |
28 |
tggagggagtggaagtttgatccaatctttcgtgaggatgttgcatacatggtagactctaccatgtatggttttcttgcagagaatcaagccatttgaa |
127 |
Q |
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|||||||||||||| |||||||| |||||| |||||||||||||| |||||||||||||||| | || ||||||||||||| |||| ||||||||| ||| |
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| T |
14908035 |
tggagggagtggaaatttgatcctatcttttgtgaggatgttgcagacatggtagactctactacgtgtggttttcttgcacagaaacaagccattggaa |
14907936 |
T |
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| Q |
128 |
aatccaacaattctcgaatataag-gatgat-ttatcttgttatattgctgagtttaaggtcgaattttcagcccagaaaactctaggaaatttggtttg |
225 |
Q |
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| T |
14907935 |
gatccaacaattctcgaatataagacattttattttcttgttatattgtcgagtttagggtcgaattttcggcaaagaaaactcaagtaaatttggtttt |
14907836 |
T |
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| Q |
226 |
caggagtagaaagatggagattggatgacaacga |
259 |
Q |
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| T |
14907835 |
caggagtagaaagattgagattgggtgagaacga |
14907802 |
T |
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