View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4612_high_13 (Length: 329)
Name: NF4612_high_13
Description: NF4612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4612_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 13847951 - 13847662
Alignment:
| Q |
13 |
aaggggaatctttctatttttcctttttccactataaaagaga------ctctctcctcatttgaagcaagtacccaacatcaatcaatacagacatat- |
105 |
Q |
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| T |
13847951 |
aaggggaatctttctatttttcctttttccactataaaagggaatgtggctctctcctcatttgaagcaagtacccaacatcaatcaatacacacatata |
13847852 |
T |
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| Q |
106 |
-ttgatagattagaagcattttattgacctccaacatttagcatcaatggcacctccttcatcagacctaaggaagattggcttagaagggtttgcttta |
204 |
Q |
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| T |
13847851 |
tttgatagattagaagcattttattgacctccaacatttagcatcaatggcacctccttcatcagacctaaggaagattggcttagaagggtttgcttta |
13847752 |
T |
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| Q |
205 |
atagacaagttttatggtccaacaacaagaaggatcagcatgcaagaccgtgcttctggggttagcaaggatggaactgtttactttgttgat |
297 |
Q |
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| T |
13847751 |
atagacaagttttatggtcca---acaagaaggatcagcatgcaagaccgtgcttctggggttagcaaggatggaactgtttactttgttgat |
13847662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 106 - 295
Target Start/End: Complemental strand, 13836584 - 13836401
Alignment:
| Q |
106 |
ttgatagattagaagcattttattgacctccaacatttagcatcaatggcacctccttcatcagacctaaggaagattggcttagaagggtttgctttaa |
205 |
Q |
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| T |
13836584 |
ttgatagaatagaaacatttacttcagctccaacatttagcatcaatggcacctccttcatcagacctaaggaaaattggcttagaagggtttgctttaa |
13836485 |
T |
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| Q |
206 |
tagacaagttttatggtccaacaacaagaaggatcagcatgcaagaccgtgcttctggggttagcaaggatggaactgtttactttgttg |
295 |
Q |
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| T |
13836484 |
tagacaagttctatggtccaacaa---gaagga---gcatggaagaccttgcatatggggctactaaggatggaactgtttactttgttg |
13836401 |
T |
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