View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4612_high_18 (Length: 301)

Name: NF4612_high_18
Description: NF4612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4612_high_18
NF4612_high_18
[»] chr4 (1 HSPs)
chr4 (10-301)||(11577513-11577804)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 301
Target Start/End: Original strand, 11577513 - 11577804
Alignment:
Q  10 agcagagttcttgttctaacccatttgtttccatacttggcaacacagtatgcatcagtcgttctaccatctttgcccttcataggtagcaaattccggg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11577513 agcagagttcttgttctaacccatttgtttccatacttggcaacacagtatgcatcagtagttctaccatctttgcccttcataggtagcaaattccggg 11577612  T
Q  110 cactaagtatcccaagttcaagatatccaatgtttttcctcctcaagtgtctcgaagacggttgaagatcactgctgaaatgtgtcgactcatcaagaac 209  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11577613 cactaagtatcccaagttcgagatatccaatgtttttcctccttaagtgtttcgaagacggttgaagatcactgctgaagtgtgtcgactcatcaagaac 11577712  T
Q  210 atgataccccgcctcaagacaaattcggagatgaattttactcgagaatttctccttctttttctctgtttcttcctccccgaccgcactag 301  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11577713 atgataccccgcctcaagacaaattcggagatgaatcttactcgagaatttctccttctttttctctgtttcttcctccccgactgcactag 11577804  T

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