View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4612_high_1_N (Length: 553)
Name: NF4612_high_1_N
Description: NF4612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4612_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 28 - 312
Target Start/End: Complemental strand, 13879691 - 13879406
Alignment:
| Q |
28 |
caacaacaacaacaacgatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtg |
127 |
Q |
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| T |
13879691 |
caacaacaacaacgatgatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtg |
13879592 |
T |
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| Q |
128 |
aggaaggaagagattgacgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaag |
227 |
Q |
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| T |
13879591 |
aggaaggaagagattgatgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaag |
13879492 |
T |
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| Q |
228 |
gg-agcactgcgactttgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaag |
312 |
Q |
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| T |
13879491 |
ggaagcactgcgactttgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaag |
13879406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 41 - 312
Target Start/End: Complemental strand, 13875461 - 13875189
Alignment:
| Q |
41 |
aacgatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaaggaagaga |
140 |
Q |
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| T |
13875461 |
aacgatgactattatcttgttctctgtgattttgaggagaccgaggagtctttgatttttcggttgaatctggtcgccaacaacgtgaggaaggaagaga |
13875362 |
T |
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| Q |
141 |
ttgacgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaaggg-agcactgcga |
239 |
Q |
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| T |
13875361 |
ttgatgtctgtgttgatcacggtactctcaggattaaggatgctcttccaggtcgaaatcgattttcaggtacactcgacttgaaagggaagcatttcga |
13875262 |
T |
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| Q |
240 |
ctttgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaag |
312 |
Q |
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| T |
13875261 |
cgttgttaacactaaagccaaaatgatagagaacaatttccttgaaattgtggttcccaagctcaacaacaag |
13875189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 374 - 524
Target Start/End: Complemental strand, 13879344 - 13879194
Alignment:
| Q |
374 |
ctcatctagatatgttttaggtttcacttaaaagagggagggatgaacagagaagtagttttttagttactattttaaatgatgaattagtttgcatgta |
473 |
Q |
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| T |
13879344 |
ctcatctagctatgttttaggtttcacttaaaagagggagggatgaacagagaagtagtattttagttactattttaaatgatgaattagtttgcatgta |
13879245 |
T |
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| Q |
474 |
tttgagatctaaaaagctatttagttagttaattagtgttctgttctgttt |
524 |
Q |
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| T |
13879244 |
tttgagatctaaaaagctatttagttagttaattagtgttctgttctgttt |
13879194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 510
Target Start/End: Complemental strand, 13885159 - 13885075
Alignment:
| Q |
429 |
tagttttttagttactattttaaatgatgaattagtttgc---atgtatttgagatctaaaaagctatttagttagttaattagt |
510 |
Q |
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| T |
13885159 |
tagtattttagttgctattttaaatgcttaattagtatgatgaatgtattagagatctaaaaagggatttagttggttaattagt |
13885075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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