View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4612_high_3 (Length: 453)
Name: NF4612_high_3
Description: NF4612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4612_high_3 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 6 - 453
Target Start/End: Complemental strand, 34820634 - 34820187
Alignment:
| Q |
6 |
agatgaagctaaaaataatagtagttttgttgacgaaagtattactaaaattgatgtcggtacgtcggaggtggttttggaagttgagcttgaccatcag |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34820634 |
agatgaagctaaaaataatagtagttttgttgacgaaagtatcactaaaattgatgtcggtatgtcggaggtggttttggaagttgagcttgaccatcag |
34820535 |
T |
|
| Q |
106 |
ctcgcagacgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaag |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34820534 |
ctcgcagacgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaag |
34820435 |
T |
|
| Q |
206 |
ttgaggttgaccatcagctcgctgaagataaatcagatgaagctgaaaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtc |
305 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34820434 |
ttgaggttgaccatcagctcgcggaagataaatcagatgaagctgaaaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtc |
34820335 |
T |
|
| Q |
306 |
agaggtggctttcgaagttgtggttgaccatcaactcgcagacggcaaatcagacgaagctgaatataatagtagttttgttgacgagagcatcacaaaa |
405 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34820334 |
agaggtggctttggaagttgtggttgaccatcaactcgcagacgacaaatcagacaaagctgaatataatagtagttttgttgacgagagcatcacaaaa |
34820235 |
T |
|
| Q |
406 |
aataatgttggtacgtcagaggtgactttggaagctgaggttgaccat |
453 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34820234 |
aataatgttggtacgtcataggtgactttggaagctgaggttgaccat |
34820187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 453
Target Start/End: Complemental strand, 34820751 - 34820304
Alignment:
| Q |
6 |
agatgaagctaaaaataatagtagttttgttgacgaaagtattactaaaattgatgtcggtacgtcggaggtggttttggaagttgagcttgaccatcag |
105 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||| || |||| |||| | |||||||| ||||||| |||||||| |||| || |||||||| |
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| T |
34820751 |
agatgaagctgaaaataatagtagttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtggctttggaagctgaggttaaccatcag |
34820652 |
T |
|
| Q |
106 |
ctcgcagacgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaag |
205 |
Q |
| |
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|| | ||| ||||| | |||||||||||||||||||| ||||||||||||||| ||| ||| |||| |||||| |||| || |||||||||||| ||| |
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| T |
34820651 |
cttgtagatgacaacttagatgaagctaaaaataatagtagttttgttgacgaaagtatcactaaaattgatgtcggtatgtcggaggtggttttggaag |
34820552 |
T |
|
| Q |
206 |
ttgaggttgaccatcagctcgctgaagataaatcagatgaagctgaaaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtc |
305 |
Q |
| |
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||||| |||||||||||||||| || || ||||||||||||||| ||||||||| | ||||||||||||||||| ||| |||||||||| ||||||| || |
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| T |
34820551 |
ttgagcttgaccatcagctcgcagacgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatc |
34820452 |
T |
|
| Q |
306 |
agaggtggctttcgaagttgtggttgaccatcaactcgcagacggcaaatcagacgaagctgaatataatagtagttttgttgacgagagcatcacaaaa |
405 |
Q |
| |
|
|||||||| ||| |||||| |||||||||||| ||||| || | |||||||| ||||||||| |||||||| |||||||||||||||| ||||||||| |
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| T |
34820451 |
agaggtggttttgaaagttgaggttgaccatcagctcgcggaagataaatcagatgaagctgaaaataatagttgttttgttgacgagagtatcacaaaa |
34820352 |
T |
|
| Q |
406 |
aataatgttggtacgtcagaggtgactttggaagctgaggttgaccat |
453 |
Q |
| |
|
||| || ||||||||||||||||| ||||||||| || |||||||||| |
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| T |
34820351 |
aatgattttggtacgtcagaggtggctttggaagttgtggttgaccat |
34820304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 453
Target Start/End: Complemental strand, 34820868 - 34820421
Alignment:
| Q |
6 |
agatgaagctaaaaataatagtagttttgttgacgaaagtattactaaaattgatgtcggtacgtcggaggtggttttggaagttgagcttgaccatcag |
105 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||| || |||| |||||| |||| | | |||||| |||||||||||| || |||||||| |
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|
| T |
34820868 |
agatgaagctggaaataatagtagttttgttgacgagagtatcacaaaaaatgatgttggtaaggcaaaggtggctttggaagttgaagttaaccatcag |
34820769 |
T |
|
| Q |
106 |
ctcgcagacgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaag |
205 |
Q |
| |
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|||| ||||||||||| |||||||||| ||||||||| ||||||||||||||||||| ||| |||||||||| ||||||| |||||||||| |||| ||| |
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| T |
34820768 |
ctcgtagacgacaaattagatgaagctgaaaataatagtagttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtggctttggaag |
34820669 |
T |
|
| Q |
206 |
ttgaggttgaccatcagctcgctgaagataaatcagatgaagctgaaaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtc |
305 |
Q |
| |
|
||||||| |||||||||| | || || || | |||||||||| ||||||||||| ||||||||||||| |||||||| |||| |||| | |||| ||| |
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|
| T |
34820668 |
ctgaggttaaccatcagcttgtagatgacaacttagatgaagctaaaaataatagtagttttgttgacgaaagtatcactaaaattgatgtcggtatgtc |
34820569 |
T |
|
| Q |
306 |
agaggtggctttcgaagttgtggttgaccatcaactcgcagacggcaaatcagacgaagctgaatataatagtagttttgttgacgagagcatcacaaaa |
405 |
Q |
| |
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||||||| ||| ||||||| | |||||||||| |||||||||| ||||||||| |||||| || |||||| |||||||||||||||||| ||| |||| |
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| T |
34820568 |
ggaggtggttttggaagttgagcttgaccatcagctcgcagacgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaa |
34820469 |
T |
|
| Q |
406 |
aataatgttggtacgtcagaggtgactttggaagctgaggttgaccat |
453 |
Q |
| |
|
||| |||||||||| ||||||||| |||| ||| ||||||||||||| |
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|
| T |
34820468 |
aatgatgttggtacatcagaggtggttttgaaagttgaggttgaccat |
34820421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 6 - 344
Target Start/End: Complemental strand, 34820517 - 34820179
Alignment:
| Q |
6 |
agatgaagctaaaaataatagtagttttgttgacgaaagtattactaaaattgatgtcggtacgtcggaggtggttttggaagttgagcttgaccatcag |
105 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||| | | |||| |||||| ||||| || |||||||||||| |||||||| ||||||||||| |
|
|
| T |
34820517 |
agatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggttgaccatcag |
34820418 |
T |
|
| Q |
106 |
ctcgcagacgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaag |
205 |
Q |
| |
|
||||| || || ||||||||||||||| ||||||||| | ||||||||||||||||| ||| |||||||||| ||||||| |||||||||| |||| ||| |
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|
| T |
34820417 |
ctcgcggaagataaatcagatgaagctgaaaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttggaag |
34820318 |
T |
|
| Q |
206 |
ttgaggttgaccatcagctcgctgaagataaatcagatgaagctgaaaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtc |
305 |
Q |
| |
|
||| |||||||||||| ||||| || || |||||||| |||||||| |||||||| |||||||||||||||| |||||||||||| || |||||||||| |
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|
| T |
34820317 |
ttgtggttgaccatcaactcgcagacgacaaatcagacaaagctgaatataatagtagttttgttgacgagagcatcacaaaaaataatgttggtacgtc |
34820218 |
T |
|
| Q |
306 |
agaggtggctttcgaagttgtggttgaccatcaactcgc |
344 |
Q |
| |
|
| ||||| |||| |||| || |||||||||||||||||| |
|
|
| T |
34820217 |
ataggtgactttggaagctgaggttgaccatcaactcgc |
34820179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 113 - 453
Target Start/End: Complemental strand, 34820878 - 34820538
Alignment:
| Q |
113 |
acgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggt |
212 |
Q |
| |
|
||||||| | |||||||||| |||||||| ||||||||||||||||||| ||| ||||||||||||||||| || |||||| |||| ||||||| || |
|
|
| T |
34820878 |
acgacaagttagatgaagctggaaataatagtagttttgttgacgagagtatcacaaaaaatgatgttggtaaggcaaaggtggctttggaagttgaagt |
34820779 |
T |
|
| Q |
213 |
tgaccatcagctcgctgaagataaatcagatgaagctgaaaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtg |
312 |
Q |
| |
|
| |||||||||||| || || |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
34820778 |
taaccatcagctcgtagacgacaaattagatgaagctgaaaataatagtagttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtg |
34820679 |
T |
|
| Q |
313 |
gctttcgaagttgtggttgaccatcaactcgcagacggcaaatcagacgaagctgaatataatagtagttttgttgacgagagcatcacaaaaaataatg |
412 |
Q |
| |
|
||||| |||| || |||| ||||||| || | ||| | ||| | ||| |||||| || |||||||||||||||||||||| || ||||| |||| | ||| |
|
|
| T |
34820678 |
gctttggaagctgaggttaaccatcagcttgtagatgacaacttagatgaagctaaaaataatagtagttttgttgacgaaagtatcactaaaattgatg |
34820579 |
T |
|
| Q |
413 |
ttggtacgtcagaggtgactttggaagctgaggttgaccat |
453 |
Q |
| |
|
| |||| ||| |||||| |||||||| |||| |||||||| |
|
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| T |
34820578 |
tcggtatgtcggaggtggttttggaagttgagcttgaccat |
34820538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 34820400 - 34820176
Alignment:
| Q |
6 |
agatgaagctaaaaataatagtagttttgttgacgaaagtattactaaaattgatgtcggtacgtcggaggtggttttggaagttgagcttgaccatcag |
105 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| ||||| || |||| |||| | |||||||| ||||||| ||||||||||| | |||||||||| |
|
|
| T |
34820400 |
agatgaagctgaaaataatagttgttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttggaagttgtggttgaccatcaa |
34820301 |
T |
|
| Q |
106 |
ctcgcagacgacaaatcagatgaagctaaaaataatattagttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaag |
205 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||| |||||||||||||||||| ||| ||||||| |||||||||| ||| ||||| |||| ||| |
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| T |
34820300 |
ctcgcagacgacaaatcagacaaagctgaatataatagtagttttgttgacgagagcatcacaaaaaataatgttggtacgtcataggtgactttggaag |
34820201 |
T |
|
| Q |
206 |
ttgaggttgaccatcagctcgctga |
230 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
34820200 |
ctgaggttgaccatcaactcgctga |
34820176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 34819985 - 34819904
Alignment:
| Q |
145 |
agttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggttgaccatcagctcg |
226 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| |||||| | | |||||||||| ||| | || |||||||||| |||| |
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|
| T |
34819985 |
agttttgttgacgagagtatcaccaaaaatgatgatggtacgtatgcggtggttttgcaagctaagattgaccatcaactcg |
34819904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 34819984 - 34819943
Alignment:
| Q |
263 |
gttttgttgacgagagtatcacaaaaaatgattttggtacgt |
304 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
34819984 |
gttttgttgacgagagtatcaccaaaaatgatgatggtacgt |
34819943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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