View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4612_high_4 (Length: 406)
Name: NF4612_high_4
Description: NF4612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4612_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 23)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 23415733 - 23415986
Alignment:
| Q |
1 |
gtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415733 |
gtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggct |
23415832 |
T |
|
| Q |
101 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
23415833 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagatacc |
23415932 |
T |
|
| Q |
201 |
aatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
23415933 |
aatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23415986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 24307477 - 24307224
Alignment:
| Q |
1 |
gtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggct |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24307477 |
gtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggct |
24307378 |
T |
|
| Q |
101 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24307377 |
tcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatacc |
24307278 |
T |
|
| Q |
201 |
aatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
24307277 |
aatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttc |
24307224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 23408564 - 23408821
Alignment:
| Q |
1 |
gtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggct |
100 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
23408564 |
gtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttcccttgaagtgattgttggct |
23408663 |
T |
|
| Q |
101 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
23408664 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatcgctttgcttgagatacc |
23408763 |
T |
|
| Q |
201 |
aatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctaca |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23408764 |
aatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctaca |
23408821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 23453396 - 23453653
Alignment:
| Q |
1 |
gtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggct |
100 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23453396 |
gtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaatttcccttgaagtgattgttggct |
23453495 |
T |
|
| Q |
101 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
23453496 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagatacc |
23453595 |
T |
|
| Q |
201 |
aatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctaca |
258 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23453596 |
aatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctaca |
23453653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 23402328 - 23402071
Alignment:
| Q |
1 |
gtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggct |
100 |
Q |
| |
|
|||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23402328 |
gtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttcccttgaagtgattgttggct |
23402229 |
T |
|
| Q |
101 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
23402228 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagatacc |
23402129 |
T |
|
| Q |
201 |
aatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctaca |
258 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23402128 |
aatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctaca |
23402071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 23868986 - 23868733
Alignment:
| Q |
1 |
gtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggct |
100 |
Q |
| |
|
|||||||| || || || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23868986 |
gtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggct |
23868887 |
T |
|
| Q |
101 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23868886 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatacc |
23868787 |
T |
|
| Q |
201 |
aatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
23868786 |
aatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23868733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 23886081 - 23885828
Alignment:
| Q |
1 |
gtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggct |
100 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23886081 |
gtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttcccttgaagtgattgttggct |
23885982 |
T |
|
| Q |
101 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
23885981 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagatacc |
23885882 |
T |
|
| Q |
201 |
aatgtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
23885881 |
aatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc |
23885828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 254
Target Start/End: Complemental strand, 26832986 - 26832736
Alignment:
| Q |
4 |
acagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
26832986 |
acagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttct |
26832887 |
T |
|
| Q |
104 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
26832886 |
tgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaat |
26832787 |
T |
|
| Q |
204 |
gtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
26832786 |
gtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26832736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 254
Target Start/End: Complemental strand, 26434275 - 26434025
Alignment:
| Q |
4 |
acagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
26434275 |
acagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttct |
26434176 |
T |
|
| Q |
104 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
26434175 |
tgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaat |
26434076 |
T |
|
| Q |
204 |
gtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
26434075 |
gtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26434025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 254
Target Start/End: Complemental strand, 26436055 - 26435805
Alignment:
| Q |
4 |
acagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
26436055 |
acagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttct |
26435956 |
T |
|
| Q |
104 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
203 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
26435955 |
tgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaat |
26435856 |
T |
|
| Q |
204 |
gtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
26435855 |
gtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc |
26435805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 4 - 254
Target Start/End: Original strand, 34662068 - 34662318
Alignment:
| Q |
4 |
acagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
103 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||| || || ||||||||||||||||| ||||| || || ||||||| |
|
|
| T |
34662068 |
acagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttct |
34662167 |
T |
|
| Q |
104 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
203 |
Q |
| |
|
|||| || | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
34662168 |
tgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaat |
34662267 |
T |
|
| Q |
204 |
gtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
||| |||||||||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
34662268 |
gtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttc |
34662318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 33 - 165
Target Start/End: Original strand, 23451788 - 23451920
Alignment:
| Q |
33 |
cttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattct |
132 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
23451788 |
cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattct |
23451887 |
T |
|
| Q |
133 |
tgagcaagcttctcgaagatatcattgatgaaa |
165 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||| |
|
|
| T |
23451888 |
tgagcgagcttctcaaagatatcgttgatgaaa |
23451920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 292 - 398
Target Start/End: Original strand, 23416021 - 23416127
Alignment:
| Q |
292 |
gcagcggaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagatttctcggcaacggtggacttcttctcctctgcgggtt |
391 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||| |
|
|
| T |
23416021 |
gcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctggtt |
23416120 |
T |
|
| Q |
392 |
tcatctc |
398 |
Q |
| |
|
|| |||| |
|
|
| T |
23416121 |
tcttctc |
23416127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 292 - 398
Target Start/End: Complemental strand, 24307186 - 24307080
Alignment:
| Q |
292 |
gcagcggaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagatttctcggcaacggtggacttcttctcctctgcgggtt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24307186 |
gcagcggaaccaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtt |
24307087 |
T |
|
| Q |
392 |
tcatctc |
398 |
Q |
| |
|
|| |||| |
|
|
| T |
24307086 |
tcttctc |
24307080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 289 - 398
Target Start/End: Complemental strand, 23402040 - 23401931
Alignment:
| Q |
289 |
cctgcagcggaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagatttctcggcaacggtggacttcttctcctctgcgg |
388 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| |||||||||||||||||||| || |||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
23402040 |
cctgctgcagaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgg |
23401941 |
T |
|
| Q |
389 |
gtttcatctc |
398 |
Q |
| |
|
||||| |||| |
|
|
| T |
23401940 |
gtttcttctc |
23401931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 295 - 398
Target Start/End: Original strand, 23453690 - 23453793
Alignment:
| Q |
295 |
gcggaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagatttctcggcaacggtggacttcttctcctctgcgggtttca |
394 |
Q |
| |
|
||||| ||||||||||| || |||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
23453690 |
gcggagccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttct |
23453789 |
T |
|
| Q |
395 |
tctc |
398 |
Q |
| |
|
|||| |
|
|
| T |
23453790 |
tctc |
23453793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 289 - 398
Target Start/End: Original strand, 23408852 - 23408961
Alignment:
| Q |
289 |
cctgcagcggaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagatttctcggcaacggtggacttcttctcctctgcgg |
388 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| |||||||| ||||||||||| || |||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
23408852 |
cctgctgcagaaccaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgg |
23408951 |
T |
|
| Q |
389 |
gtttcatctc |
398 |
Q |
| |
|
||||| |||| |
|
|
| T |
23408952 |
gtttcttctc |
23408961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 298 - 398
Target Start/End: Complemental strand, 23868689 - 23868589
Alignment:
| Q |
298 |
gaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagatttctcggcaacggtggacttcttctcctctgcgggtttcatct |
397 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||| ||||||||||| || |||| ||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
23868689 |
gaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct |
23868590 |
T |
|
| Q |
398 |
c |
398 |
Q |
| |
|
| |
|
|
| T |
23868589 |
c |
23868589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 298 - 398
Target Start/End: Complemental strand, 26832692 - 26832592
Alignment:
| Q |
298 |
gaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagatttctcggcaacggtggacttcttctcctctgcgggtttcatct |
397 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||||||||||| || |||| |||||| || ||||||||||||||||||||||| |||||| ||| |
|
|
| T |
26832692 |
gaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttcttct |
26832593 |
T |
|
| Q |
398 |
c |
398 |
Q |
| |
|
| |
|
|
| T |
26832592 |
c |
26832592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 298 - 398
Target Start/End: Complemental strand, 23885784 - 23885684
Alignment:
| Q |
298 |
gaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagatttctcggcaacggtggacttcttctcctctgcgggtttcatct |
397 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||| ||||||||||| || |||| ||||||||| |||||||||||||||||||| || |||||| ||| |
|
|
| T |
23885784 |
gaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctggtttcttct |
23885685 |
T |
|
| Q |
398 |
c |
398 |
Q |
| |
|
| |
|
|
| T |
23885684 |
c |
23885684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 298 - 398
Target Start/End: Complemental strand, 26433981 - 26433881
Alignment:
| Q |
298 |
gaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagatttctcggcaacggtggacttcttctcctctgcgggtttcatct |
397 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||| ||||||||||| || |||| |||||| || ||||||||||||||||||||||| |||||| ||| |
|
|
| T |
26433981 |
gaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttcttct |
26433882 |
T |
|
| Q |
398 |
c |
398 |
Q |
| |
|
| |
|
|
| T |
26433881 |
c |
26433881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 298 - 398
Target Start/End: Complemental strand, 26435761 - 26435661
Alignment:
| Q |
298 |
gaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagatttctcggcaacggtggacttcttctcctctgcgggtttcatct |
397 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||| ||||||||||| || |||| |||||| || ||||||||||||||||||||||| |||||| ||| |
|
|
| T |
26435761 |
gaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctggtttcttct |
26435662 |
T |
|
| Q |
398 |
c |
398 |
Q |
| |
|
| |
|
|
| T |
26435661 |
c |
26435661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 34662370 - 34662462
Alignment:
| Q |
306 |
ttcctttggtagcttcttccctgcctttggcttcttctctgctggagatttctcggcaacggtggacttcttctcctctgcgggtttcatctc |
398 |
Q |
| |
|
||||||||| |||||||| || |||||||||||||||||||| |||| ||||||||| |||||||| |||||||||||||| |||||| |||| |
|
|
| T |
34662370 |
ttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttcttctc |
34662462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 4 - 254
Target Start/End: Complemental strand, 41670651 - 41670401
Alignment:
| Q |
4 |
acagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
103 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| || | |||||| || |||||||| | || |||||||| || |||| ||||||||||| ||||||| |
|
|
| T |
41670651 |
acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttct |
41670552 |
T |
|
| Q |
104 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
203 |
Q |
| |
|
||||||| | ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||| || ||||||||||||||||| |
|
|
| T |
41670551 |
tgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaat |
41670452 |
T |
|
| Q |
204 |
gtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
||| || ||||| || || ||||| ||||| |||||||||||||| ||||| |
|
|
| T |
41670451 |
gtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttc |
41670401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 33216699 - 33216594
Alignment:
| Q |
1 |
gtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||||| |
|
|
| T |
33216699 |
gtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttgaattttccttgaagtgattgttggct |
33216600 |
T |
|
| Q |
101 |
tcttgt |
106 |
Q |
| |
|
|||||| |
|
|
| T |
33216599 |
tcttgt |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 40796014 - 40795767
Alignment:
| Q |
10 |
ttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgt |
109 |
Q |
| |
|
||||| ||||| || ||||| |||||||| | ||| || |||||||| || | || ||||||||||| || | || ||||| || || |||||||||| |
|
|
| T |
40796014 |
ttggttccctcggagacagcgtgcttggcaagttcgccgggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtaggtttcttgttgt |
40795915 |
T |
|
| Q |
110 |
aacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgg |
209 |
Q |
| |
|
| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| || ||||| ||||| |||||||| || |
|
|
| T |
40795914 |
agcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagattccaatgtcagg |
40795815 |
T |
|
| Q |
210 |
gtgaacttgtttcagaactttgaatatgtagatcttgtatgtttctac |
257 |
Q |
| |
|
||||| || || ||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
40795814 |
atgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctac |
40795767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 4 - 254
Target Start/End: Complemental strand, 29391717 - 29391467
Alignment:
| Q |
4 |
acagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
103 |
Q |
| |
|
||||||||||| || || ||||||||||| || ||||||||||| |||||||| | | || || || ||||| ||||| || || || || || |||| |
|
|
| T |
29391717 |
acagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatctccctcgacgtaatcgtcggtttct |
29391618 |
T |
|
| Q |
104 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
203 |
Q |
| |
|
||||||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| |||||| || ||||| || |
|
|
| T |
29391617 |
tgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatacctat |
29391518 |
T |
|
| Q |
204 |
gtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
|| || ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |
|
|
| T |
29391517 |
atcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc |
29391467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 45576457 - 45576399
Alignment:
| Q |
1 |
gtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaag |
59 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| ||||||||| | || |||||||| |
|
|
| T |
45576457 |
gtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggcagaacaag |
45576399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
| Q |
126 |
tgattcttgagcaagcttctcgaagatatcattgatg |
162 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33216594 |
tgattcttgagcaagcttcacgaagatatcattgatg |
33216558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 47317536 - 47317431
Alignment:
| Q |
1 |
gtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggct |
100 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| |||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
47317536 |
gtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttgaatttcccttgaagtgattgttggct |
47317437 |
T |
|
| Q |
101 |
tcttgt |
106 |
Q |
| |
|
|||||| |
|
|
| T |
47317436 |
tcttgt |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 4 - 254
Target Start/End: Original strand, 40180297 - 40180547
Alignment:
| Q |
4 |
acagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct |
103 |
Q |
| |
|
|||||||| || || |||||||||||||| || |||||||| ||||||||||| | ||| || ||||| ||||| ||||| ||||| || || ||||||| |
|
|
| T |
40180297 |
acagccttagtcccttcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttct |
40180396 |
T |
|
| Q |
104 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat |
203 |
Q |
| |
|
|||| || | ||| | | || ||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||| || |||||||| | ||| || |
|
|
| T |
40180397 |
tgttatacctagccaaacgagacgattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgat |
40180496 |
T |
|
| Q |
204 |
gtctgggtgaacttgtttcagaactttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
|| || ||||| ||||||||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
40180497 |
atcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggtttc |
40180547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
| Q |
126 |
tgattcttgagcaagcttctcgaagatatcattgatg |
162 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47317431 |
tgattcttgagcaagcttcacgaagatatcattgatg |
47317395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 14715491 - 14715433
Alignment:
| Q |
13 |
gtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagt |
71 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
14715491 |
gtaccctcagacacaacatgcttggccaattctccaggaagaacaagtctcactgcagt |
14715433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 254
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
| Q |
129 |
ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagaact |
228 |
Q |
| |
|
||||||||| || |||| |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| ||||| |
|
|
| T |
29684826 |
ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc |
29684727 |
T |
|
| Q |
229 |
ttgaatatgtagatcttgtatgtttc |
254 |
Q |
| |
|
|||||||| || |||||||| ||||| |
|
|
| T |
29684726 |
ttgaatatatatatcttgtaggtttc |
29684701 |
T |
|
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