View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4612_high_5 (Length: 389)
Name: NF4612_high_5
Description: NF4612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4612_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 6 - 360
Target Start/End: Complemental strand, 42126433 - 42126079
Alignment:
| Q |
6 |
aggagcagagatacaaccactacaaaaagttgaaggaggccaacatgttcttaaaactgcaaagcttaataatgttaaagaggttagttccaagcagcaa |
105 |
Q |
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| T |
42126433 |
aggagctgagatacaaccactacaaaaagttgaaggaggccaacatgttcttaaaactgcaaagcttaataatgttaaagaggttagttccaagcaccaa |
42126334 |
T |
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| Q |
106 |
aacattttatattccaataccatgcaaaacttttaaatttgttttccggtaattagatgcaagaatccatgctttattgctcaaaacatcattccatatg |
205 |
Q |
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| T |
42126333 |
aacattttatattccaataccatgcaaaacttttaaatttgttttccggtaattagatgcaagaatccatgctttattgctcaaaacatcattccatatg |
42126234 |
T |
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| Q |
206 |
atagcagttgtgttatttgaacatgaagttacaaacatcgcatgtgacactgtgtttatctatatctctcttttactttatatcctctacaacttacaga |
305 |
Q |
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| T |
42126233 |
atagcagttgtgttatttgaacatgaaattacaaacatcgcatgtgacactgtgtttatctatatctctcttttactttatatcctctacaacttacaga |
42126134 |
T |
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| Q |
306 |
catttcaaaaatacacaaaaaccaaagtcgacatcaaaattttgagtcaaaaatc |
360 |
Q |
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| T |
42126133 |
catttcaaaaatacacaaaaaccaaagtcgacatcaaaattttgagtcaaaaatc |
42126079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 33844149 - 33844221
Alignment:
| Q |
259 |
gtttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacacaaaaaccaaa |
331 |
Q |
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| T |
33844149 |
gtttatctctatctctctcttactatttatctcctacaacttaaatgcatttcaaaaatacacaaaaaccaaa |
33844221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 36646827 - 36646749
Alignment:
| Q |
256 |
tgtgtttatctatatctctcttttactttatatcctctacaacttac--agacatttcaaaaatacacaaaaaccaaag |
332 |
Q |
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| T |
36646827 |
tgtgtttatctctatctctcttttactttttaccttatacaacttacttagatttttaaaaaatacacaaaaatcaaag |
36646749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 12119911 - 12119845
Alignment:
| Q |
260 |
tttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacacaaaaa |
326 |
Q |
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| T |
12119911 |
tttatctatatctctctcttactttttatcttctattggttacacatatttcaaaaatacacaaaaa |
12119845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 20809151 - 20809087
Alignment:
| Q |
258 |
tgtttatctatatctctcttttactttatatcctctacaacttacagacatttcaaaaatacaca |
322 |
Q |
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| T |
20809151 |
tgttcatctctatctctctcttactttttatcttttacaacatacacacatttaaaaaatacaca |
20809087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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