View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4612_high_6 (Length: 387)
Name: NF4612_high_6
Description: NF4612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4612_high_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 51 - 387
Target Start/End: Complemental strand, 47117170 - 47116840
Alignment:
| Q |
51 |
gcagaacctgtggaacctgcacgagc-tgtcggttcaatgagatggacatcatcaccggcgaagatggtgatgttggcgttcccgttgagctttgttgcc |
149 |
Q |
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| T |
47117170 |
gcagaacctgtggaacctgcacgagcatgtcgattcaatggc---gacatcatcaccggtgaagacggtgatgttggcgttcccgttgagctttgttgcc |
47117074 |
T |
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| Q |
150 |
tatcatacattctccgcctatccatctacaaaacaagaaattaaaaataatcgttaaaaggtgatcgatcgagtcattgatacgttgatattgcttacct |
249 |
Q |
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| T |
47117073 |
tatcatacattctccgcctatccatctacaaaacaagaaattaaaaataatcgttaaaaggtgatcga----gtcattgatacgttgatattgcttacct |
47116978 |
T |
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| Q |
250 |
tgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaactaaagatataaaagaaattggttattgaatatctttgataaaata |
349 |
Q |
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| T |
47116977 |
tgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaactaaagatataaaagaaattggttattgaatatctttgataaaata |
47116878 |
T |
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| Q |
350 |
taactattgtaattacctgagaagcgatgaaacaaaac |
387 |
Q |
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| T |
47116877 |
taactattgtaattacctgagaagcgatgaaacaaaac |
47116840 |
T |
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