View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4612_high_8 (Length: 358)
Name: NF4612_high_8
Description: NF4612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4612_high_8 |
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| [»] scaffold0042 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 52800211 - 52800484
Alignment:
| Q |
11 |
cagagatgccaagtttatgccagtcaatggaagtg---ttgttgggtgggtgagcatacggtc-gaga-gagatgaaacaaactgagaaggagtaacacc |
105 |
Q |
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| T |
52800211 |
cagaaatgccgagtttatgccagtcaatggaagcggcgttgttgggtgggtgagcatagtgtttgagaagagatgaaacaaactgagaaggagtaacacc |
52800310 |
T |
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| Q |
106 |
ttcgttgacaagagatttaatggattcaacaagagtgcgtgtcagatctagaaatgcttcagcgtcagcaacctgttctcgaggtttcttcacttgctcg |
205 |
Q |
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| T |
52800311 |
ttcgttgacaagagatttaacggatccaacaagagtgcgtgtcagatctagaagtgcttcagcgtcagcaacctgttctcgaggtttcttcacttgctca |
52800410 |
T |
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| Q |
206 |
tgtaacttatcgaactcatgaaggattgaatcgaacttctctgaatcaccgttcatcaaatcatctttttcctc |
279 |
Q |
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| T |
52800411 |
tgtaacttatcgaactcgtgaaggattgaatcgaacttctctgaatcaccgttcatcaaatcatctttttcctc |
52800484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 52800548 - 52800622
Alignment:
| Q |
279 |
cattgataagagacttgagtttgaagaactcggagcggatgattctgcaaatactggagtcctgatgctcctctt |
353 |
Q |
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| T |
52800548 |
cattgataagagacttgagtttgaagaactcggagcggatgattctgcgaatactggagtcctgattctcctctt |
52800622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 31726 - 31984
Alignment:
| Q |
16 |
atgccaagtttatgccagtcaatggaagtgttgttgggtgggtgagcatacggtc-gag-agagatgaaacaaactgagaaggagtaacaccttcgttga |
113 |
Q |
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| T |
31726 |
atgccaagcttttgccagtcaatggaagtgttg---ggtgggtgagcataatgtttgaggagagatgacacaaactgagaaggagtaaccccttcgttca |
31822 |
T |
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| Q |
114 |
caagagatttaatggattcaacaagagtgcgtgtcagatctagaaatgcttcagcgtcagcaacctgttctcgaggtttcttcacttgctcgtgtaactt |
213 |
Q |
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| T |
31823 |
ccatagagttaaccgatccaaccagagtgcgtgtcagatctagaagtgcttcagcgtcaacaatctgctcttgtggcttcttcacttgctcgtctaactt |
31922 |
T |
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| Q |
214 |
atcgaactcatgaaggattgaatcgaacttctctgaatcaccgttcatcaaatcatcttttt |
275 |
Q |
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| T |
31923 |
gtcgaagtcatgaaggattgaatcgaacttgtccgaagcagtgttcattaaatcatcttttt |
31984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 32070 - 32144
Alignment:
| Q |
279 |
cattgataagagacttgagtttgaagaactcggagcggatgattctgcaaatactggagtcctgatgctcctctt |
353 |
Q |
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| T |
32070 |
cattgataagagacttgagtttgaagaactcggagcggatgattctgcgaatgttggagtcctgatgctcctctt |
32144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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